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OPENSEQ.org

NUSB - RSGA
UniProt: P0A780 - P39286
Length: 489
Sequences: 313
Seq/Len: 0.76
I_Prob: 0.00

NUSB - N utilization substance protein B
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: NUSB
RSGA - Putative ribosome biogenesis GTPase RsgA
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSGA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
95_R 222_S 1.49 0.00
124_N 216_S 1.42 0.00
51_L 323_E 1.37 0.00
125_G 301_D 1.30 0.00
104_I 237_N 1.26 0.00
108_I 46_S 1.25 0.00
106_E 50_M 1.22 0.00
57_T 75_T 1.16 0.00
16_A 286_G 1.16 0.00
49_R 185_Y 1.14 0.00
125_G 287_F 1.12 0.00
108_I 53_D 1.11 0.00
81_E 111_D 1.11 0.00
40_V 100_V 1.09 0.00
53_A 224_L 1.09 0.00
98_V 330_H 1.09 0.00
57_T 48_F 1.09 0.00
108_I 216_S 1.07 0.00
27_I 73_L 1.06 0.00
103_A 239_I 1.05 0.00
16_A 263_D 1.05 0.00
107_A 184_G 1.04 0.00
92_L 327_E 1.04 0.00
86_R 242_N 1.01 0.00
108_I 252_A 1.01 0.00
108_I 273_F 1.00 0.00
62_L 98_E 1.00 0.00
25_N 289_E 1.00 0.00
118_D 127_V 0.99 0.00
125_G 248_H 0.99 0.00
101_K 120_A 0.98 0.00
67_K 298_K 0.98 0.00
57_T 73_L 0.98 0.00
57_T 66_I 0.98 0.00
49_R 42_G 0.96 0.00
69_Y 301_D 0.96 0.00
101_K 82_R 0.95 0.00
51_L 247_Q 0.95 0.00
50_E 72_S 0.95 0.00
106_E 301_D 0.93 0.00
105_N 187_V 0.93 0.00
20_W 247_Q 0.92 0.00
32_Y 210_S 0.92 0.00
107_A 169_G 0.92 0.00
65_L 334_E 0.91 0.00
39_D 320_K 0.91 0.00
56_A 285_Q 0.91 0.00
109_E 288_V 0.91 0.00
93_S 135_E 0.91 0.00
124_N 46_S 0.90 0.00
104_I 160_N 0.90 0.00
26_D 129_V 0.90 0.00
124_N 53_D 0.90 0.00
71_S 198_L 0.90 0.00
19_S 278_L 0.89 0.00
57_T 65_N 0.89 0.00
108_I 254_R 0.88 0.00
104_I 158_V 0.88 0.00
128_D 335_S 0.88 0.00
103_A 306_T 0.88 0.00
97_D 212_F 0.88 0.00
124_N 335_S 0.88 0.00
55_V 121_A 0.88 0.00
51_L 124_D 0.87 0.00
70_L 263_D 0.87 0.00
34_F 278_L 0.87 0.00
126_V 159_L 0.87 0.00
115_G 308_P 0.86 0.00
58_N 139_N 0.86 0.00
29_D 155_P 0.86 0.00
63_D 213_A 0.86 0.00
122_F 149_E 0.85 0.00
26_D 299_Y 0.85 0.00
28_A 148_C 0.85 0.00
128_D 254_R 0.84 0.00
98_V 128_I 0.84 0.00
48_F 210_S 0.84 0.00
82_K 143_R 0.83 0.00
50_E 216_S 0.83 0.00
79_Q 298_K 0.83 0.00
19_S 243_S 0.82 0.00
64_G 69_T 0.82 0.00
94_K 321_I 0.82 0.00
111_A 190_V 0.82 0.00
128_D 216_S 0.82 0.00
57_T 49_G 0.82 0.00
21_Q 120_A 0.82 0.00
53_A 67_R 0.82 0.00
47_Y 136_L 0.81 0.00
124_N 254_R 0.81 0.00
124_N 144_Y 0.81 0.00
109_E 263_D 0.81 0.00
58_N 45_I 0.81 0.00
29_D 332_I 0.80 0.00
97_D 81_W 0.80 0.00
82_K 157_I 0.80 0.00
55_V 67_R 0.80 0.00
20_W 123_I 0.80 0.00
27_I 120_A 0.80 0.00
56_A 295_G 0.80 0.00
90_Y 149_E 0.79 0.00
128_D 46_S 0.79 0.00
92_L 244_G 0.79 0.00
63_D 242_N 0.79 0.00
118_D 288_V 0.79 0.00
94_K 264_V 0.79 0.00
86_R 160_N 0.79 0.00
81_E 88_A 0.79 0.00
100_Y 282_Q 0.78 0.00
66_M 227_L 0.78 0.00
98_V 242_N 0.78 0.00
120_H 159_L 0.78 0.00
113_S 305_D 0.78 0.00
118_D 145_L 0.78 0.00
73_L 127_V 0.78 0.00
70_L 104_T 0.78 0.00
88_A 218_V 0.77 0.00
87_I 153_I 0.77 0.00
121_K 120_A 0.77 0.00
107_A 133_L 0.77 0.00
11_E 80_V 0.77 0.00
57_T 70_I 0.77 0.00
86_R 64_C 0.77 0.00
26_D 255_L 0.77 0.00
128_D 242_N 0.77 0.00
44_D 316_V 0.77 0.00
42_D 222_S 0.76 0.00
124_N 218_V 0.76 0.00
43_V 129_V 0.76 0.00
66_M 78_R 0.76 0.00
104_I 216_S 0.76 0.00
72_R 157_I 0.76 0.00
86_R 197_G 0.76 0.00
37_E 159_L 0.76 0.00
126_V 227_L 0.76 0.00
20_W 258_F 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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