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OPENSEQ.org

RNFA - RNFG
UniProt: P0A766 - P77285
Length: 399
Sequences: 777
Seq/Len: 2.18
I_Prob: 0.93

RNFA - Electron transport complex protein RnfA
Paralog alert: 0.97 [within 20: 0.70] - ratio of genomes with paralogs
Cluster includes: RNFA RNFE
RNFG - Electron transport complex protein RnfG
Paralog alert: 0.35 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RNFG
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
72_L 12_L 1.85 0.93
95_T 33_T 1.69 0.88
90_M 27_N 1.62 0.84
59_I 31_K 1.35 0.66
118_G 168_D 1.29 0.60
87_F 22_L 1.21 0.53
152_A 171_T 1.19 0.50
33_K 144_H 1.14 0.45
95_T 66_V 1.14 0.45
147_V 5_I 1.13 0.44
79_L 19_S 1.13 0.44
13_L 145_F 1.13 0.44
56_A 17_A 1.11 0.42
90_M 66_V 1.09 0.40
53_S 110_A 1.06 0.36
130_F 148_K 1.04 0.35
54_I 56_N 1.04 0.34
99_L 89_A 1.03 0.33
101_R 41_Q 1.02 0.32
80_V 49_V 1.01 0.31
76_A 45_L 1.01 0.31
56_A 25_A 0.99 0.30
56_A 154_D 0.97 0.27
139_S 138_L 0.97 0.27
124_I 84_D 0.97 0.27
116_V 45_L 0.96 0.27
133_S 151_S 0.96 0.26
95_T 22_L 0.95 0.25
25_L 106_L 0.94 0.25
23_L 168_D 0.94 0.24
37_T 102_G 0.94 0.24
87_F 26_I 0.93 0.24
62_W 14_L 0.93 0.24
58_L 86_K 0.93 0.23
83_V 19_S 0.93 0.23
24_G 26_I 0.91 0.22
20_V 176_T 0.91 0.22
44_A 173_A 0.91 0.22
137_G 38_A 0.91 0.21
128_H 12_L 0.91 0.21
81_I 124_H 0.90 0.21
27_P 100_Y 0.90 0.21
56_A 196_A 0.89 0.20
32_S 154_D 0.89 0.20
72_L 11_T 0.88 0.20
84_V 98_D 0.88 0.19
13_L 161_K 0.87 0.19
39_M 53_E 0.86 0.18
135_L 85_D 0.86 0.18
27_P 106_L 0.86 0.18
93_R 38_A 0.85 0.18
44_A 99_G 0.85 0.17
135_L 77_R 0.85 0.17
39_M 17_A 0.85 0.17
54_I 89_A 0.85 0.17
44_A 36_E 0.84 0.17
13_L 124_H 0.83 0.16
76_A 32_T 0.83 0.16
150_L 36_E 0.83 0.16
89_E 41_Q 0.83 0.16
29_M 127_T 0.83 0.16
98_V 155_D 0.83 0.16
61_T 125_H 0.82 0.15
93_R 41_Q 0.82 0.15
77_F 194_L 0.82 0.15
79_L 118_G 0.82 0.15
47_F 24_A 0.82 0.15
90_M 34_I 0.81 0.15
17_F 23_T 0.81 0.14
95_T 13_A 0.81 0.14
116_V 171_T 0.80 0.14
84_V 8_H 0.80 0.14
45_T 97_P 0.80 0.14
17_F 8_H 0.80 0.14
157_R 74_G 0.79 0.14
30_G 118_G 0.79 0.14
137_G 130_L 0.79 0.13
84_V 171_T 0.79 0.13
35_L 29_M 0.79 0.13
138_F 178_R 0.79 0.13
22_F 90_A 0.78 0.13
147_V 20_T 0.78 0.13
45_T 161_K 0.78 0.13
12_V 111_D 0.78 0.13
50_T 42_Q 0.78 0.13
11_T 100_Y 0.78 0.12
74_T 45_L 0.78 0.12
23_L 99_G 0.78 0.12
63_I 186_R 0.77 0.12
40_G 176_T 0.77 0.12
148_M 128_P 0.77 0.12
23_L 126_E 0.77 0.12
152_A 163_D 0.77 0.12
54_I 68_A 0.77 0.12
25_L 100_Y 0.77 0.12
36_E 48_Q 0.76 0.12
56_A 111_D 0.76 0.12
153_A 15_F 0.76 0.12
47_F 35_A 0.76 0.11
157_R 116_V 0.75 0.11
103_L 168_D 0.75 0.11
39_M 85_D 0.75 0.11
154_I 171_T 0.75 0.11
131_L 69_P 0.75 0.11
38_A 59_L 0.75 0.11
19_L 141_W 0.75 0.11
127_G 85_D 0.75 0.11
92_V 11_T 0.75 0.11
141_A 102_G 0.75 0.11
158_L 155_D 0.75 0.11
107_L 180_V 0.74 0.11
87_F 135_E 0.74 0.10
72_L 109_G 0.74 0.10
65_I 108_V 0.74 0.10
9_V 36_E 0.74 0.10
151_F 96_A 0.74 0.10
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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