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OPENSEQ.org

LPXA - UPPS
UniProt: P0A722 - P60472
Length: 515
Sequences: 412
Seq/Len: 0.85
I_Prob: 0.00

LPXA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
Paralog alert: 0.60 [within 20: 0.54] - ratio of genomes with paralogs
Cluster includes: LPXA
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_R 236_F 1.28 0.00
10_P 62_I 1.24 0.00
16_E 106_R 1.22 0.00
139_A 229_F 1.18 0.00
189_G 95_S 1.16 0.00
106_G 181_V 1.15 0.00
26_I 62_I 1.13 0.00
20_I 236_F 1.10 0.00
208_S 29_G 1.04 0.00
20_I 80_Q 1.01 0.00
68_I 229_F 1.00 0.00
130_G 99_S 0.99 0.00
62_I 122_E 0.99 0.00
200_E 21_V 0.97 0.00
39_G 220_L 0.96 0.00
32_V 160_E 0.96 0.00
86_I 55_S 0.95 0.00
186_I 212_A 0.95 0.00
211_A 104_N 0.95 0.00
188_Q 33_K 0.94 0.00
129_V 238_N 0.94 0.00
22_A 54_V 0.93 0.00
211_A 23_I 0.93 0.00
261_I 69_A 0.93 0.00
124_A 206_L 0.92 0.00
126_D 128_E 0.91 0.00
205_R 167_L 0.90 0.00
60_N 171_Q 0.89 0.00
14_V 122_E 0.89 0.00
59_D 148_R 0.89 0.00
152_I 141_I 0.88 0.00
111_V 100_L 0.88 0.00
165_I 62_I 0.88 0.00
208_S 39_R 0.87 0.00
12_A 61_G 0.87 0.00
260_L 214_L 0.87 0.00
158_A 113_T 0.86 0.00
44_L 155_V 0.86 0.00
16_E 127_S 0.86 0.00
233_K 21_V 0.85 0.00
96_V 226_E 0.85 0.00
92_I 181_V 0.85 0.00
67_S 105_V 0.84 0.00
136_A 78_P 0.84 0.00
202_L 82_V 0.84 0.00
60_N 229_F 0.83 0.00
151_A 67_L 0.83 0.00
17_G 62_I 0.83 0.00
232_V 100_L 0.83 0.00
123_I 231_G 0.82 0.00
233_K 62_I 0.82 0.00
184_Y 49_S 0.82 0.00
134_I 36_G 0.82 0.00
14_V 63_E 0.81 0.00
44_L 151_I 0.81 0.00
218_A 198_E 0.81 0.00
15_E 62_I 0.81 0.00
195_F 141_I 0.81 0.00
157_T 102_R 0.81 0.00
185_V 72_S 0.81 0.00
250_T 246_T 0.80 0.00
256_S 67_L 0.80 0.00
27_G 138_T 0.80 0.00
20_I 121_Q 0.80 0.00
188_Q 72_S 0.80 0.00
89_R 173_D 0.79 0.00
41_G 236_F 0.79 0.00
175_S 158_L 0.79 0.00
55_K 59_N 0.79 0.00
262_R 107_L 0.79 0.00
23_N 54_V 0.78 0.00
10_P 95_S 0.78 0.00
126_D 108_R 0.78 0.00
206_G 167_L 0.77 0.00
237_A 201_I 0.77 0.00
176_G 140_N 0.77 0.00
31_I 54_V 0.77 0.00
14_V 176_M 0.76 0.00
189_G 102_R 0.76 0.00
10_P 100_L 0.76 0.00
135_L 228_D 0.76 0.00
19_S 218_D 0.76 0.00
25_H 171_Q 0.76 0.00
128_T 229_F 0.76 0.00
207_F 109_I 0.75 0.00
236_I 196_G 0.75 0.00
163_C 47_A 0.75 0.00
21_G 173_D 0.75 0.00
135_L 144_N 0.75 0.00
177_V 61_G 0.74 0.00
119_I 236_F 0.74 0.00
104_Q 174_E 0.73 0.00
122_H 152_V 0.73 0.00
24_A 55_S 0.73 0.00
50_V 115_R 0.73 0.00
50_V 98_K 0.73 0.00
9_H 141_I 0.73 0.00
113_S 177_L 0.73 0.00
119_I 99_S 0.73 0.00
34_P 55_S 0.73 0.00
157_T 177_L 0.72 0.00
32_V 218_D 0.72 0.00
51_N 87_E 0.72 0.00
163_C 68_Y 0.72 0.00
50_V 113_T 0.72 0.00
184_Y 235_A 0.72 0.00
155_G 134_N 0.72 0.00
207_F 29_G 0.72 0.00
135_L 47_A 0.72 0.00
236_I 141_I 0.72 0.00
49_V 82_V 0.72 0.00
48_V 181_V 0.72 0.00
126_D 113_T 0.72 0.00
158_A 57_A 0.72 0.00
195_F 105_V 0.71 0.00
46_S 24_I 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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