| UniProt: | P0A722 | Sequence |
Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN. |
| EcoGene: | EG10545 | ||
| Length: | 262 (259) | ||
| Sequences: | 1834 | ||
| Seq/Len: | 7.08 |
| LPXA
Paralog alert: 0.60 [within 20: 0.54] - ratio of genomes with paralogs |
Legend: The darker and larger the blue dots, the higher coevolution strength.
Residue pairs sorted by coevolution strength:
| i | j | Scaled Score | Prob | |
| 59_D | 89_R | 4.405 | 1.00 | |
| 21_G | 40_E | 3.921 | 1.00 | |
| 89_R | 114_D | 3.563 | 1.00 | |
| 30_C | 44_L | 3.22 | 1.00 | |
| 19_S | 37_E | 3.135 | 1.00 | |
| 15_E | 34_P | 2.822 | 1.00 | |
| 41_G | 59_D | 2.738 | 1.00 | |
| 20_I | 26_I | 2.652 | 1.00 | |
| 237_A | 254_A | 2.65 | 1.00 | |
| 113_S | 131_N | 2.6 | 1.00 | |
| 25_H | 43_V | 2.565 | 1.00 | |
| 58_R | 88_D | 2.557 | 1.00 | |
| 131_N | 149_D | 2.509 | 1.00 | |
| 114_D | 132_R | 2.4 | 1.00 | |
| 150_F | 168_H | 2.357 | 1.00 | |
| 130_G | 149_D | 2.342 | 1.00 | |
| 37_E | 55_K | 2.328 | 1.00 | |
| 30_C | 48_V | 2.269 | 1.00 | |
| 129_V | 133_C | 2.262 | 1.00 | |
| 23_N | 40_E | 2.204 | 1.00 | |
| 112_G | 131_N | 2.196 | 1.00 | |
| 20_I | 24_A | 2.174 | 1.00 | |
| 88_D | 113_S | 2.104 | 1.00 | |
| 211_A | 245_E | 2.062 | 1.00 | |
| 62_I | 66_A | 2.048 | 1.00 | |
| 60_N | 90_N | 2.031 | 1.00 | |
| 132_R | 150_F | 2.008 | 1.00 | |
| 62_I | 92_I | 1.94 | 1.00 | |
| 38_I | 42_T | 1.936 | 1.00 | |
| 23_N | 41_G | 1.935 | 1.00 | |
| 11_T | 29_F | 1.872 | 1.00 | |
| 168_H | 205_R | 1.83 | 1.00 | |
| 153_I | 159_V | 1.815 | 1.00 | |
| 39_G | 58_R | 1.785 | 1.00 | |
| 56_I | 62_I | 1.761 | 1.00 | |
| 35_H | 53_H | 1.749 | 1.00 | |
| 43_V | 61_E | 1.71 | 1.00 | |
| 40_E | 58_R | 1.706 | 1.00 | |
| 247_K | 251_D | 1.702 | 1.00 | |
| 26_I | 30_C | 1.697 | 1.00 | |
| 149_D | 167_A | 1.671 | 1.00 | |
| 117_L | 121_A | 1.644 | 1.00 | |
| 42_T | 60_N | 1.604 | 1.00 | |
| 22_A | 40_E | 1.584 | 1.00 | |
| 29_F | 47_H | 1.58 | 1.00 | |
| 148_D | 167_A | 1.579 | 1.00 | |
| 140_T | 158_A | 1.574 | 1.00 | |
| 92_I | 98_I | 1.567 | 1.00 | |
| 95_S | 120_N | 1.55 | 1.00 | |
| 146_S | 164_I | 1.541 | 0.99 | |
| 84_V | 98_I | 1.519 | 0.99 | |
| 228_T | 231_E | 1.516 | 0.99 | |
| 21_G | 24_A | 1.481 | 0.99 | |
| 148_D | 248_A | 1.478 | 0.99 | |
| 183_P | 252_F | 1.473 | 0.99 | |
| 42_T | 56_I | 1.458 | 0.99 | |
| 110_K | 128_T | 1.456 | 0.99 | |
| 98_I | 117_L | 1.455 | 0.99 | |
| 17_G | 34_P | 1.429 | 0.99 | |
| 90_N | 115_N | 1.41 | 0.99 | |
| 118_M | 136_A | 1.409 | 0.99 | |
| 140_T | 156_M | 1.402 | 0.99 | |
| 233_K | 253_F | 1.399 | 0.99 | |
| 45_K | 61_E | 1.389 | 0.99 | |
| 35_H | 81_P | 1.358 | 0.98 | |
| 135_L | 139_A | 1.351 | 0.98 | |
| 160_H | 258_R | 1.346 | 0.98 | |
| 24_A | 42_T | 1.345 | 0.98 | |
| 152_I | 170_M | 1.335 | 0.98 | |
| 85_E | 110_K | 1.332 | 0.98 | |
| 68_I | 84_V | 1.316 | 0.98 | |
| 159_V | 165_I | 1.308 | 0.98 | |
| 82_T | 107_G | 1.3 | 0.98 | |
| 44_L | 50_V | 1.297 | 0.98 | |
| 68_I | 98_I | 1.296 | 0.98 | |
| 41_G | 58_R | 1.288 | 0.98 | |
| 44_L | 48_V | 1.285 | 0.98 | |
| 17_G | 35_H | 1.273 | 0.97 | |
| 117_L | 123_I | 1.255 | 0.97 | |
| 170_M | 186_I | 1.252 | 0.97 | |
| 229_L | 233_K | 1.25 | 0.97 | |
| 50_V | 54_T | 1.242 | 0.97 | |
| 85_E | 108_L | 1.237 | 0.97 | |
| 167_A | 248_A | 1.228 | 0.96 | |
| 130_G | 146_S | 1.204 | 0.96 | |
| 83_R | 108_L | 1.2 | 0.96 | |
| 9_H | 13_I | 1.198 | 0.96 | |
| 222_I | 253_F | 1.179 | 0.95 | |
| 62_I | 68_I | 1.171 | 0.95 | |
| 32_V | 44_L | 1.169 | 0.95 | |
| 61_E | 71_V | 1.156 | 0.95 | |
| 227_K | 232_V | 1.148 | 0.94 | |
| 177_V | 181_V | 1.142 | 0.94 | |
| 202_L | 215_I | 1.131 | 0.94 | |
| 51_N | 70_E | 1.128 | 0.94 | |
| 222_I | 249_F | 1.115 | 0.93 | |
| 66_A | 96_V | 1.115 | 0.93 | |
| 75_L | 116_L | 1.114 | 0.93 | |
| 59_D | 114_D | 1.111 | 0.93 | |
| 214_A | 246_V | 1.107 | 0.93 | |
| 112_G | 128_T | 1.08 | 0.92 | |
| 158_A | 173_G | 1.077 | 0.91 | |
| 158_A | 174_C | 1.077 | 0.91 | |
| 105_G | 191_H | 1.061 | 0.91 | |
| 221_L | 236_I | 1.06 | 0.91 | |
| 97_T | 120_N | 1.059 | 0.91 | |
| 28_P | 46_S | 1.053 | 0.90 | |
| 166_G | 182_P | 1.049 | 0.90 | |
| 24_A | 58_R | 1.046 | 0.90 | |
| 250_T | 254_A | 1.044 | 0.90 | |
| 21_G | 39_G | 1.037 | 0.89 | |
| 38_I | 50_V | 1.028 | 0.89 | |
| 42_T | 88_D | 1.016 | 0.88 | |
| 65_F | 95_S | 1.01 | 0.88 | |
| 151_A | 167_A | 1.01 | 0.88 | |
| 12_A | 30_C | 1.009 | 0.87 | |
| 251_D | 254_A | 1.006 | 0.87 |
- Text file of predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | Chains | Cov | P(%) | HHΔ | Acc | |
| 1j2zA | 1 | 0.9809 | 100 | 0.286 | Contact Map | 0.839 |
| 3t57A | 1 | 0.9962 | 100 | 0.314 | Contact Map | 0.756 |
| 4eqyA | 6 | 1 | 100 | 0.32 | Contact Map | 0.876 |
| 3r0sA | 1 | 0.9809 | 100 | 0.324 | Contact Map | 0.843 |
| 2qiaA | 1 | 1 | 100 | 0.325 | Contact Map | 0.814 |
| 4e6uA | 1 | 1 | 100 | 0.327 | Contact Map | 0.856 |
| 3hsqA | 3 | 0.9771 | 100 | 0.329 | Contact Map | 0.865 |
| 2iu8A | 3 | 0.874 | 100 | 0.518 | Contact Map | 0.831 |
| 3pmoA | 1 | 0.8855 | 100 | 0.519 | Contact Map | 0.786 |
| 3fs8A | 2 | 0.9351 | 100 | 0.533 | Contact Map | 0.751 |
Sequence Conservation (Image Generated using WebLogo v3)