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OPENSEQ.org

LPXA - SKP
UniProt: P0A722 - P0AEU7
Length: 423
Sequences: 293
Seq/Len: 0.71
I_Prob: 0.00

LPXA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
Paralog alert: 0.60 [within 20: 0.54] - ratio of genomes with paralogs
Cluster includes: LPXA
SKP - Chaperone protein skp
Paralog alert: 0.11 [within 20: 0.08] - ratio of genomes with paralogs
Cluster includes: SKP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
130_G 75_K 1.34 0.00
66_A 1_M 1.32 0.00
44_L 27_V 1.30 0.00
20_I 130_S 1.17 0.00
187_A 27_V 1.12 0.00
20_I 48_N 1.11 0.00
92_I 66_A 1.11 0.00
174_C 144_Y 1.09 0.00
10_P 56_E 1.06 0.00
238_E 135_L 1.06 0.00
238_E 154_A 1.05 0.00
90_N 130_S 1.04 0.00
157_T 153_T 1.02 0.00
10_P 69_K 1.00 0.00
126_D 6_L 1.00 0.00
163_C 136_V 0.98 0.00
105_G 43_S 0.96 0.00
45_K 55_S 0.96 0.00
21_G 20_A 0.96 0.00
165_I 24_I 0.96 0.00
84_V 27_V 0.95 0.00
229_L 93_T 0.95 0.00
32_V 59_R 0.95 0.00
45_K 89_A 0.94 0.00
30_C 64_L 0.94 0.00
48_V 146_S 0.94 0.00
227_K 32_L 0.93 0.00
113_S 155_D 0.93 0.00
122_H 102_E 0.92 0.00
234_P 144_Y 0.92 0.00
86_I 66_A 0.92 0.00
177_V 120_I 0.92 0.00
101_G 25_A 0.92 0.00
32_V 67_K 0.91 0.00
72_N 33_F 0.91 0.00
210_E 132_D 0.91 0.00
132_R 116_L 0.90 0.00
126_D 35_Q 0.89 0.00
50_V 123_A 0.89 0.00
33_G 83_L 0.89 0.00
181_V 93_T 0.89 0.00
113_S 67_K 0.89 0.00
126_D 14_L 0.88 0.00
101_G 14_L 0.88 0.00
182_P 159_Q 0.88 0.00
20_I 77_G 0.88 0.00
215_I 28_N 0.88 0.00
135_L 155_D 0.88 0.00
194_P 70_K 0.87 0.00
26_I 92_Q 0.87 0.00
27_G 107_R 0.87 0.00
223_Y 61_E 0.86 0.00
110_K 36_V 0.86 0.00
165_I 52_G 0.86 0.00
54_T 132_D 0.86 0.00
197_V 50_F 0.86 0.00
62_I 21_A 0.86 0.00
48_V 25_A 0.85 0.00
123_I 105_R 0.85 0.00
216_R 83_L 0.85 0.00
24_A 90_Q 0.84 0.00
61_E 137_V 0.84 0.00
14_V 74_M 0.83 0.00
210_E 124_V 0.83 0.00
49_V 124_V 0.83 0.00
170_M 125_K 0.83 0.00
157_T 44_N 0.82 0.00
176_G 136_V 0.82 0.00
135_L 160_V 0.82 0.00
159_V 152_I 0.81 0.00
146_S 33_F 0.81 0.00
122_H 83_L 0.81 0.00
32_V 55_S 0.81 0.00
42_T 33_F 0.81 0.00
170_M 70_K 0.80 0.00
123_I 132_D 0.80 0.00
96_V 124_V 0.80 0.00
181_V 136_V 0.80 0.00
228_T 89_A 0.80 0.00
32_V 88_M 0.79 0.00
150_F 75_K 0.79 0.00
15_E 95_A 0.79 0.00
187_A 25_A 0.79 0.00
215_I 83_L 0.79 0.00
38_I 75_K 0.79 0.00
155_G 157_L 0.79 0.00
105_G 83_L 0.79 0.00
91_R 71_L 0.78 0.00
98_I 144_Y 0.78 0.00
164_I 79_D 0.78 0.00
50_V 24_I 0.78 0.00
17_G 118_T 0.78 0.00
140_T 152_I 0.78 0.00
139_A 160_V 0.78 0.00
52_G 110_N 0.78 0.00
92_I 124_V 0.78 0.00
225_S 129_N 0.77 0.00
21_G 56_E 0.77 0.00
213_T 60_M 0.77 0.00
65_F 151_D 0.77 0.00
114_D 7_A 0.77 0.00
8_V 106_A 0.77 0.00
236_I 86_D 0.77 0.00
174_C 113_R 0.77 0.00
23_N 148_D 0.77 0.00
119_I 67_K 0.76 0.00
40_E 135_L 0.76 0.00
69_G 30_G 0.76 0.00
72_N 127_V 0.76 0.00
138_N 58_Q 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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