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OPENSEQ.org

LPXA - TAMA
UniProt: P0A722 - P0ADE4
Length: 839
Sequences: 579
Seq/Len: 0.76
I_Prob: 0.00

LPXA - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
Paralog alert: 0.60 [within 20: 0.54] - ratio of genomes with paralogs
Cluster includes: LPXA
TAMA - Translocation and assembly module TamA
Paralog alert: 0.76 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TAMA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
50_V 66_R 1.34 0.00
26_I 451_L 1.24 0.00
14_V 87_P 1.24 0.00
159_V 475_S 1.21 0.00
157_T 468_F 1.19 0.00
21_G 274_Y 1.16 0.00
165_I 235_W 1.15 0.00
153_I 171_A 1.14 0.00
26_I 433_N 1.14 0.00
128_T 98_V 1.11 0.00
16_E 223_L 1.10 0.00
68_I 342_T 1.10 0.00
175_S 540_V 1.09 0.00
14_V 103_P 1.08 0.00
14_V 555_F 1.06 0.00
147_V 312_D 1.05 0.00
14_V 235_W 1.04 0.00
111_V 98_V 1.03 0.00
68_I 479_Y 1.03 0.00
20_I 384_M 1.02 0.00
151_A 559_V 1.02 0.00
34_P 263_R 1.01 0.00
218_A 111_V 0.97 0.00
165_I 460_D 0.97 0.00
168_H 175_H 0.96 0.00
45_K 522_S 0.96 0.00
113_S 458_D 0.96 0.00
86_I 391_M 0.95 0.00
216_R 426_F 0.95 0.00
32_V 459_F 0.95 0.00
32_V 350_V 0.94 0.00
151_A 506_Y 0.94 0.00
177_V 421_G 0.94 0.00
123_I 357_L 0.94 0.00
165_I 431_A 0.93 0.00
208_S 546_S 0.93 0.00
92_I 540_V 0.92 0.00
147_V 428_V 0.92 0.00
15_E 274_Y 0.92 0.00
15_E 226_L 0.92 0.00
114_D 354_Y 0.90 0.00
137_N 109_T 0.89 0.00
32_V 124_L 0.89 0.00
23_N 137_L 0.89 0.00
142_A 445_F 0.88 0.00
101_G 68_G 0.88 0.00
19_S 132_A 0.86 0.00
15_E 540_V 0.85 0.00
148_D 271_G 0.85 0.00
157_T 122_D 0.85 0.00
142_A 103_P 0.84 0.00
114_D 448_R 0.84 0.00
62_I 173_G 0.83 0.00
159_V 127_L 0.83 0.00
62_I 94_L 0.83 0.00
141_L 546_S 0.83 0.00
85_E 548_V 0.82 0.00
155_G 547_P 0.82 0.00
216_R 90_G 0.82 0.00
236_I 235_W 0.82 0.00
56_I 411_Y 0.81 0.00
113_S 430_Q 0.81 0.00
56_I 98_V 0.81 0.00
72_N 206_L 0.81 0.00
50_V 414_D 0.81 0.00
15_E 98_V 0.81 0.00
187_A 491_G 0.81 0.00
159_V 522_S 0.81 0.00
44_L 274_Y 0.81 0.00
172_G 265_E 0.81 0.00
218_A 390_V 0.81 0.00
213_T 149_L 0.80 0.00
48_V 346_S 0.80 0.00
120_N 183_Y 0.80 0.00
189_G 546_S 0.80 0.00
142_A 136_V 0.80 0.00
147_V 300_T 0.80 0.00
155_G 404_T 0.80 0.00
46_S 447_T 0.80 0.00
39_G 504_L 0.80 0.00
256_S 426_F 0.80 0.00
174_C 506_Y 0.80 0.00
26_I 274_Y 0.80 0.00
16_E 504_L 0.79 0.00
131_N 302_T 0.79 0.00
165_I 291_M 0.79 0.00
15_E 147_K 0.79 0.00
232_V 421_G 0.79 0.00
21_G 206_L 0.79 0.00
142_A 68_G 0.78 0.00
38_I 200_Q 0.78 0.00
181_V 103_P 0.78 0.00
20_I 175_H 0.78 0.00
123_I 504_L 0.78 0.00
172_G 79_I 0.78 0.00
68_I 79_I 0.77 0.00
175_S 383_T 0.77 0.00
14_V 362_Q 0.77 0.00
125_H 468_F 0.77 0.00
41_G 518_V 0.77 0.00
98_I 414_D 0.77 0.00
114_D 388_P 0.77 0.00
187_A 95_I 0.77 0.00
38_I 537_G 0.76 0.00
229_L 313_F 0.76 0.00
187_A 508_Y 0.76 0.00
20_I 438_T 0.76 0.00
197_V 550_P 0.76 0.00
189_G 547_P 0.76 0.00
155_G 170_I 0.76 0.00
59_D 395_T 0.76 0.00
150_F 148_S 0.75 0.00
139_A 320_L 0.75 0.00
50_V 498_K 0.75 0.00
50_V 448_R 0.75 0.00
59_D 95_I 0.75 0.00
16_E 423_D 0.74 0.00
260_L 88_K 0.74 0.00
131_N 366_N 0.74 0.00
128_T 174_L 0.74 0.00
233_K 558_P 0.74 0.00
178_A 275_S 0.74 0.00
159_V 79_I 0.74 0.00
170_M 104_V 0.74 0.00
48_V 386_F 0.74 0.00
122_H 117_A 0.74 0.00
130_G 523_G 0.74 0.00
262_R 463_P 0.74 0.00
171_V 493_L 0.74 0.00
152_I 74_Y 0.73 0.00
50_V 223_L 0.73 0.00
91_R 169_G 0.73 0.00
224_R 180_D 0.73 0.00
232_V 188_R 0.73 0.00
173_G 316_K 0.73 0.00
158_A 152_I 0.73 0.00
165_I 173_G 0.73 0.00
202_L 316_K 0.73 0.00
215_I 196_F 0.73 0.00
32_V 368_R 0.73 0.00
233_K 104_V 0.73 0.00
54_T 357_L 0.73 0.00
123_I 404_T 0.73 0.00
153_I 201_I 0.72 0.00
14_V 413_I 0.72 0.00
151_A 153_A 0.72 0.00
208_S 271_G 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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