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OPENSEQ.org

HYPA - HYPD
UniProt: P0A700 - P24192
Length: 489
Sequences: 342
Seq/Len: 0.71
I_Prob: 0.00

HYPA - Protein HypA
Paralog alert: 0.48 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: HYBF HYPA
HYPD - Hydrogenase isoenzymes formation protein HypD
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: HYPD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
7_C 172_F 1.15 0.00
50_L 235_G 1.11 0.00
29_V 182_L 1.11 0.00
64_L 2_R 1.10 0.00
59_G 85_I 1.06 0.00
38_C 204_M 1.06 0.00
29_V 144_G 1.03 0.00
64_L 61_V 1.02 0.00
60_C 119_V 1.02 0.00
63_H 310_P 1.01 0.00
10_A 61_V 1.00 0.00
41_T 143_F 0.98 0.00
37_S 104_G 0.98 0.00
46_F 127_D 0.94 0.00
9_R 363_W 0.93 0.00
22_G 235_G 0.92 0.00
55_S 273_V 0.92 0.00
108_I 37_I 0.87 0.00
71_C 13_V 0.87 0.00
29_V 122_V 0.86 0.00
106_L 224_V 0.86 0.00
108_I 61_V 0.86 0.00
8_Q 185_L 0.86 0.00
29_V 111_Q 0.85 0.00
55_S 292_G 0.85 0.00
56_V 197_L 0.85 0.00
59_G 141_V 0.83 0.00
26_V 334_H 0.83 0.00
6_L 363_W 0.83 0.00
108_I 335_Q 0.83 0.00
39_V 118_D 0.83 0.00
56_V 236_V 0.83 0.00
65_E 119_V 0.83 0.00
12_E 335_Q 0.82 0.00
32_K 295_L 0.82 0.00
112_E 213_F 0.82 0.00
5_T 211_Y 0.81 0.00
108_I 166_V 0.81 0.00
48_F 335_Q 0.81 0.00
51_V 351_A 0.81 0.00
46_F 327_L 0.80 0.00
106_L 89_P 0.80 0.00
114_D 113_K 0.79 0.00
14_I 117_A 0.79 0.00
11_L 194_D 0.79 0.00
89_R 195_A 0.79 0.00
20_K 296_T 0.79 0.00
108_I 133_Q 0.79 0.00
59_G 328_T 0.78 0.00
58_E 53_L 0.78 0.00
9_R 59_E 0.78 0.00
25_R 309_R 0.78 0.00
59_G 341_N 0.78 0.00
31_L 133_Q 0.78 0.00
7_C 299_Y 0.77 0.00
29_V 189_P 0.77 0.00
6_L 235_G 0.77 0.00
42_S 204_M 0.77 0.00
5_T 257_V 0.77 0.00
57_A 100_M 0.77 0.00
29_V 20_L 0.77 0.00
37_S 50_K 0.77 0.00
62_L 87_S 0.76 0.00
82_L 298_D 0.76 0.00
47_C 16_L 0.76 0.00
55_S 53_L 0.76 0.00
26_V 367_R 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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