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OPENSEQ.org

DNAA - RECF
UniProt: P03004 - P0A7H0
Length: 824
Sequences: 730
Seq/Len: 0.89
I_Prob: 0.01

DNAA - Chromosomal replication initiator protein DnaA
Paralog alert: 0.03 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: DNAA
RECF - DNA replication and repair protein RecF
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RECF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
367_L 50_R 1.50 0.01
213_A 243_Q 1.32 0.01
240_F 127_G 1.31 0.01
359_V 253_K 1.28 0.01
213_A 19_L 1.24 0.01
341_N 241_D 1.23 0.01
438_L 269_L 1.22 0.01
36_N 235_E 1.16 0.00
387_Y 234_L 1.12 0.00
26_I 328_F 1.11 0.00
288_W 40_L 1.10 0.00
223_K 50_R 1.09 0.00
265_I 39_V 1.07 0.00
244_E 47_G 1.07 0.00
268_S 119_P 1.06 0.00
40_L 6_L 1.06 0.00
387_Y 112_M 1.05 0.00
143_E 125_L 1.05 0.00
130_S 185_A 1.05 0.00
198_V 210_F 1.03 0.00
416_E 160_Q 1.03 0.00
223_K 268_T 1.03 0.00
372_K 278_M 1.02 0.00
298_E 253_K 1.02 0.00
331_S 247_T 1.02 0.00
321_V 19_L 1.02 0.00
325_I 276_L 1.02 0.00
427_D 258_I 1.02 0.00
10_L 196_S 1.02 0.00
306_L 129_P 1.02 0.00
299_L 241_D 1.01 0.00
146_S 177_W 1.00 0.00
198_V 37_T 0.99 0.00
438_L 124_L 0.98 0.00
401_R 45_T 0.98 0.00
454_I 55_L 0.98 0.00
111_P 232_E 0.97 0.00
265_I 177_W 0.97 0.00
288_W 26_N 0.97 0.00
139_D 172_E 0.97 0.00
213_A 42_A 0.96 0.00
295_E 241_D 0.96 0.00
374_V 183_P 0.96 0.00
210_M 47_G 0.95 0.00
146_S 286_G 0.95 0.00
270_R 127_G 0.95 0.00
435_T 39_V 0.95 0.00
159_D 14_I 0.95 0.00
267_T 211_L 0.95 0.00
354_I 43_I 0.95 0.00
157_V 262_G 0.94 0.00
338_G 255_D 0.94 0.00
29_L 108_L 0.94 0.00
208_Q 121_G 0.94 0.00
264_I 306_S 0.94 0.00
22_F 59_R 0.94 0.00
314_D 4_T 0.93 0.00
465_L 276_L 0.93 0.00
280_D 45_T 0.93 0.00
74_L 313_R 0.93 0.00
320_E 278_M 0.93 0.00
38_L 3_L 0.93 0.00
143_E 11_F 0.93 0.00
325_I 77_E 0.93 0.00
231_A 256_L 0.93 0.00
318_P 19_L 0.93 0.00
198_V 52_F 0.92 0.00
256_A 294_G 0.92 0.00
393_D 108_L 0.92 0.00
394_L 190_T 0.92 0.00
279_E 115_Q 0.92 0.00
154_A 299_Y 0.92 0.00
412_A 254_A 0.92 0.00
401_R 277_L 0.91 0.00
198_V 116_L 0.91 0.00
42_A 107_E 0.91 0.00
403_V 19_L 0.91 0.00
437_V 72_G 0.91 0.00
375_T 203_M 0.90 0.00
28_P 50_R 0.90 0.00
265_I 148_F 0.90 0.00
292_V 144_E 0.90 0.00
280_D 143_N 0.90 0.00
306_L 316_L 0.90 0.00
221_E 6_L 0.90 0.00
25_W 300_L 0.89 0.00
268_S 104_K 0.89 0.00
318_P 187_Q 0.89 0.00
190_M 252_H 0.89 0.00
194_P 124_L 0.89 0.00
209_D 155_K 0.89 0.00
317_L 154_L 0.89 0.00
465_L 178_D 0.89 0.00
266_L 101_D 0.89 0.00
356_I 60_V 0.88 0.00
387_Y 162_N 0.88 0.00
351_G 198_G 0.88 0.00
9_C 125_L 0.88 0.00
193_K 290_T 0.88 0.00
70_D 28_L 0.88 0.00
75_R 196_S 0.88 0.00
226_Y 122_F 0.87 0.00
50_W 127_G 0.87 0.00
451_S 136_L 0.87 0.00
10_L 151_W 0.87 0.00
42_A 38_S 0.87 0.00
375_T 126_N 0.87 0.00
142_V 120_E 0.87 0.00
465_L 138_W 0.87 0.00
160_N 130_K 0.86 0.00
288_W 348_F 0.86 0.00
295_E 177_W 0.86 0.00
426_G 53_R 0.86 0.00
182_L 93_S 0.86 0.00
13_L 33_G 0.86 0.00
234_I 227_E 0.86 0.00
264_I 70_L 0.86 0.00
387_Y 171_Y 0.85 0.00
213_A 340_M 0.85 0.00
322_A 52_F 0.85 0.00
221_E 182_I 0.85 0.00
465_L 173_Q 0.85 0.00
74_L 182_I 0.85 0.00
458_F 254_A 0.85 0.00
35_D 354_K 0.85 0.00
294_I 306_S 0.85 0.00
10_L 59_R 0.85 0.00
198_V 229_E 0.85 0.00
278_V 162_N 0.84 0.00
324_F 34_S 0.84 0.00
195_N 130_K 0.84 0.00
194_P 23_P 0.84 0.00
29_L 83_I 0.84 0.00
98_P 176_P 0.84 0.00
324_F 60_V 0.84 0.00
273_K 329_V 0.84 0.00
409_M 101_D 0.84 0.00
355_T 242_R 0.84 0.00
401_R 147_F 0.84 0.00
97_A 197_A 0.84 0.00
40_L 217_T 0.84 0.00
211_V 277_L 0.84 0.00
320_E 348_F 0.83 0.00
256_A 257_R 0.83 0.00
197_K 249_H 0.83 0.00
93_S 236_R 0.83 0.00
304_A 129_P 0.83 0.00
198_V 39_V 0.83 0.00
78_V 213_E 0.83 0.00
213_A 15_E 0.83 0.00
190_M 20_A 0.83 0.00
465_L 96_R 0.82 0.00
409_M 64_E 0.82 0.00
60_N 98_D 0.82 0.00
174_T 274_L 0.82 0.00
465_L 247_T 0.82 0.00
68_G 70_L 0.82 0.00
320_E 127_G 0.82 0.00
240_F 46_L 0.82 0.00
272_P 255_D 0.82 0.00
267_T 51_A 0.82 0.00
301_T 117_I 0.82 0.00
197_K 97_I 0.82 0.00
401_R 49_G 0.82 0.00
74_L 212_P 0.82 0.00
39_A 354_K 0.82 0.00
428_A 3_L 0.82 0.00
393_D 183_P 0.82 0.00
212_K 181_L 0.82 0.00
186_G 127_G 0.82 0.00
453_D 156_R 0.82 0.00
438_L 244_L 0.81 0.00
183_H 47_G 0.81 0.00
394_L 107_E 0.81 0.00
282_L 280_A 0.81 0.00
213_A 140_C 0.81 0.00
211_V 95_V 0.81 0.00
440_A 145_P 0.81 0.00
394_L 114_M 0.81 0.00
375_T 104_K 0.81 0.00
139_D 84_G 0.81 0.00
24_M 332_I 0.81 0.00
68_G 45_T 0.81 0.00
134_V 161_R 0.80 0.00
301_T 307_E 0.80 0.00
443_K 299_Y 0.80 0.00
110_A 225_E 0.80 0.00
242_N 284_A 0.80 0.00
393_D 125_L 0.80 0.00
174_T 149_T 0.80 0.00
417_L 185_A 0.80 0.00
286_F 129_P 0.80 0.00
338_G 119_P 0.80 0.00
271_Y 184_L 0.80 0.00
441_C 147_F 0.80 0.00
170_L 4_T 0.80 0.00
354_I 106_A 0.80 0.00
22_F 65_Q 0.80 0.00
61_G 185_A 0.80 0.00
241_A 223_G 0.80 0.00
273_K 26_N 0.80 0.00
284_S 71_H 0.80 0.00
174_T 119_P 0.80 0.00
384_A 178_D 0.80 0.00
446_Q 115_Q 0.80 0.00
35_D 213_E 0.79 0.00
293_A 241_D 0.79 0.00
221_E 232_E 0.79 0.00
377_D 241_D 0.79 0.00
174_T 79_R 0.79 0.00
359_V 175_R 0.79 0.00
136_H 24_G 0.79 0.00
294_I 235_E 0.79 0.00
458_F 140_C 0.79 0.00
231_A 145_P 0.79 0.00
322_A 46_L 0.79 0.00
356_I 47_G 0.79 0.00
38_L 194_E 0.79 0.00
78_V 29_V 0.78 0.00
378_N 38_S 0.78 0.00
406_P 49_G 0.78 0.00
49_D 284_A 0.78 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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