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OPENSEQ.org

LSPA - SYI
UniProt: P00804 - P00956
Length: 1102
Sequences: 716
Seq/Len: 0.66
I_Prob: 0.00

LSPA - Lipoprotein signal peptidase
Paralog alert: 0.05 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: LSPA
SYI - Isoleucine--tRNA ligase
Paralog alert: 0.50 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: SYI SYL SYV
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
142_T 775_W 1.20 0.00
78_G 679_E 1.06 0.00
116_L 680_E 1.04 0.00
104_I 391_G 1.00 0.00
69_R 507_A 0.99 0.00
45_S 456_V 0.97 0.00
15_L 34_D 0.97 0.00
51_A 828_A 0.96 0.00
33_N 587_R 0.95 0.00
128_Y 169_L 0.94 0.00
104_I 326_D 0.94 0.00
34_F 539_S 0.93 0.00
86_M 907_Y 0.92 0.00
97_N 371_L 0.92 0.00
75_I 115_E 0.91 0.00
122_V 64_I 0.91 0.00
156_F 341_D 0.91 0.00
133_H 213_A 0.91 0.00
148_A 127_R 0.90 0.00
26_S 131_A 0.90 0.00
43_F 87_Y 0.90 0.00
106_G 539_S 0.89 0.00
46_L 513_A 0.89 0.00
18_V 519_D 0.89 0.00
42_L 51_F 0.89 0.00
48_L 928_V 0.88 0.00
143_A 586_Y 0.88 0.00
46_L 704_E 0.87 0.00
43_F 828_A 0.86 0.00
148_A 715_L 0.86 0.00
42_L 52_I 0.86 0.00
109_L 578_T 0.86 0.00
95_K 341_D 0.86 0.00
146_V 43_A 0.86 0.00
116_L 891_V 0.86 0.00
134_F 431_R 0.85 0.00
104_I 704_E 0.85 0.00
104_I 721_V 0.85 0.00
109_L 152_H 0.85 0.00
106_G 254_S 0.85 0.00
21_I 803_A 0.84 0.00
151_I 577_S 0.84 0.00
30_I 273_L 0.84 0.00
22_I 36_D 0.82 0.00
156_F 577_S 0.82 0.00
46_L 457_A 0.82 0.00
131_D 587_R 0.82 0.00
83_L 131_A 0.81 0.00
16_V 2_S 0.81 0.00
101_Y 84_L 0.81 0.00
15_L 152_H 0.80 0.00
42_L 689_V 0.80 0.00
78_G 293_L 0.80 0.00
51_A 554_H 0.80 0.00
89_R 152_H 0.80 0.00
28_Y 920_I 0.80 0.00
17_V 370_T 0.80 0.00
74_G 386_L 0.80 0.00
50_Y 189_V 0.80 0.00
72_F 909_Q 0.79 0.00
83_L 588_Q 0.79 0.00
101_Y 785_Y 0.79 0.00
26_S 285_I 0.79 0.00
46_L 556_A 0.79 0.00
25_G 549_P 0.79 0.00
66_G 932_G 0.79 0.00
50_Y 437_E 0.79 0.00
20_L 919_E 0.79 0.00
60_F 325_L 0.79 0.00
89_R 601_R 0.78 0.00
17_V 43_A 0.78 0.00
146_V 611_V 0.78 0.00
139_L 52_I 0.78 0.00
58_F 463_C 0.78 0.00
40_V 449_Q 0.78 0.00
34_F 788_T 0.77 0.00
74_G 255_I 0.77 0.00
136_T 610_T 0.77 0.00
21_I 674_D 0.77 0.00
102_A 587_R 0.77 0.00
134_F 539_S 0.76 0.00
156_F 275_K 0.76 0.00
40_V 439_K 0.76 0.00
144_I 97_C 0.76 0.00
156_F 142_I 0.76 0.00
46_L 902_P 0.76 0.00
21_I 704_E 0.76 0.00
112_L 774_V 0.75 0.00
51_A 175_N 0.75 0.00
104_I 778_L 0.75 0.00
17_V 615_D 0.74 0.00
129_V 454_S 0.74 0.00
144_I 9_N 0.74 0.00
48_L 893_L 0.74 0.00
78_G 496_V 0.74 0.00
18_V 27_G 0.74 0.00
34_F 206_T 0.74 0.00
139_L 513_A 0.74 0.00
85_V 345_I 0.74 0.00
139_L 236_S 0.74 0.00
133_H 157_M 0.74 0.00
50_Y 80_K 0.73 0.00
58_F 734_R 0.73 0.00
51_A 615_D 0.73 0.00
145_C 500_V 0.73 0.00
81_V 806_D 0.73 0.00
57_A 417_A 0.73 0.00
127_F 321_D 0.73 0.00
21_I 793_E 0.73 0.00
39_T 348_K 0.73 0.00
104_I 625_L 0.73 0.00
128_Y 726_F 0.73 0.00
80_S 300_E 0.73 0.00
139_L 259_F 0.73 0.00
61_L 24_R 0.72 0.00
38_D 764_A 0.72 0.00
48_L 759_L 0.72 0.00
25_G 139_K 0.72 0.00
100_A 276_D 0.72 0.00
88_Y 909_Q 0.72 0.00
73_A 479_H 0.72 0.00
122_V 661_F 0.72 0.00
13_L 500_V 0.72 0.00
24_L 153_P 0.72 0.00
128_Y 157_M 0.72 0.00
101_Y 49_K 0.72 0.00
68_Q 193_S 0.72 0.00
116_L 436_K 0.72 0.00
157_L 23_K 0.71 0.00
150_L 868_A 0.71 0.00
16_V 902_P 0.71 0.00
41_P 326_D 0.71 0.00
18_V 46_K 0.71 0.00
28_Y 347_Q 0.71 0.00
109_L 27_G 0.71 0.00
46_L 720_S 0.71 0.00
42_L 869_T 0.71 0.00
75_I 681_M 0.71 0.00
83_L 800_D 0.71 0.00
78_G 741_D 0.71 0.00
41_P 255_I 0.70 0.00
86_M 666_L 0.70 0.00
155_G 816_R 0.70 0.00
24_L 353_T 0.70 0.00
145_C 443_W 0.70 0.00
122_V 362_T 0.70 0.00
81_V 519_D 0.70 0.00
109_L 920_I 0.70 0.00
96_L 149_D 0.70 0.00
60_F 616_V 0.70 0.00
44_P 706_Y 0.70 0.00
151_I 2_S 0.70 0.00
34_F 321_D 0.70 0.00
20_L 922_G 0.70 0.00
132_W 443_W 0.70 0.00
30_I 514_K 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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