May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
SH3 Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [P:0003] and [I:0028]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.1 0.1 0.1 -0.1 0.1 0.1 0.1 -0.3 -0.4 -0.2 0.1 0.3 0.2 0.1 -0.3 0 0.1 0 -0.1 0.3
F 0.8 -0.4 -0.8 -0.5 0 -0.4 -0.2 -0.2 0.3 0.6 -0.2 0 -0.4 0.4 -0.3 0.2 0.9 0.2 -0.1 -0.2
I -0.7 0.1 -0.3 0 0.6 0.2 0.3 0 -0.1 0.1 0.3 0.5 -0.1 -0.6 -0.4 0.1 0.3 -0.2 -0.1 0.4
L -0.5 0.6 0.4 -0.4 0.1 -0.3 0.4 -0.7 0 -0.1 0.2 0 0 -0.1 0.4 0.4 0.5 -0.1 -0.1 -0.3
V 0.2 0.1 -0.1 0.2 -0.1 0.7 -0.3 -0.1 -0.3 0.3 -0.1 0.3 -0.4 -0.1 -0.1 0.1 0.6 0.1 -0.1 -0.2
M -0.4 -0.4 0.4 -0.3 -0.4 -0.1 -0.2 -0.5 -0.1 0.2 1.4 0.1 -0.3 0.1 -0.2 -0.3 0.1 -0.1 -0.1 0.6
W -0.1 -0.1 -0.2 0.6 0.3 0 0 -0.3 0.1 -0.5 0.1 0.3 -0.1 -0.1 -0.2 -0.1 -0.1 0 0 0
Y -0.3 -0.3 0 -0.4 -0.6 -0.1 0.1 -0.1 1.3 0.5 0.5 0.2 -0.2 -0.2 0 -0.2 -0.3 -0.1 0 -0.1
D 0.1 -0.5 -0.4 0.2 0.7 -0.3 -0.2 -0.3 -0.2 0.1 0.3 0.5 0.6 -0.6 0 0.2 -0.3 0.4 -0.1 -0.2
E 0.4 0.1 0.2 0.5 0.2 0.3 0.5 0 -0.7 0.1 -0.3 0.2 0.3 -0.6 0 -0.4 -0.1 0 -0.4 -0.2
K 0.2 0.5 0.7 0.1 0.6 0.1 -0.1 1.2 -0.6 0.3 -0.4 -0.6 0 -0.1 -0.5 -0.4 0.1 -0.3 -0.2 -0.4
R -0.5 0 0.6 -0.6 0.8 -0.2 0 -0.3 0 0.6 -0.4 -0.1 -0.2 0 -0.1 0.1 0 -0.1 -0.2 0.1
H -0.1 -0.3 0.2 -0.2 0 -0.2 -0.1 -0.2 0.5 0.1 0.2 -0.3 0 0.2 0.3 0.2 -0.3 -0.1 0 -0.1
N -0.6 -0.4 -0.3 0.7 0 -0.3 -0.2 0.2 0.1 -0.5 0.4 0.4 0.5 0.2 -0.1 -0.6 0.3 -0.2 0.3 0.2
Q 0.3 0.7 0.2 0 0.2 0.1 0.4 0.1 -0.3 0.2 0 -0.4 -0.5 -0.2 -0.3 -0.1 -0.5 -0.2 0.2 0
S 0.1 -0.1 -0.7 -0.1 -0.5 -0.2 -0.3 -0.1 0 0.1 0.1 0.3 0.4 0.1 0.2 0.1 0 0.8 0.2 0
T 0.5 -0.3 0.2 0.1 -0.2 0.1 -0.3 0.3 -0.4 -0.3 -0.2 0 0.6 -0.2 0.8 -0.5 0.1 -0.2 0.4 -0.3
G 0.7 -0.4 -0.1 0.6 -0.1 -0.1 0 0.3 0.2 -1 -0.7 -0.4 0.2 0.7 0.4 0.5 0 -0.2 -0.1 -0.3
P -0.2 0.5 0.6 0.2 -0.1 0.3 -0.4 0.6 0.2 0.3 -1.1 -0.6 -0.1 0.6 0.3 0 -0.2 -0.2 -0.2 0.2
C -0.2 0 -0.4 -0.3 -0.8 -0.2 0.1 0.1 0.9 0.6 -0.1 -0.3 -0.1 0.2 0.8 0.2 -0.4 0.1 -0.1 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0003 0.1 -0.8 0.3 0.5 0.6 -0.4 -1.3 -1 -0.6 -0.4 0.3 0.3 -0.6 -0.1 0.2 0.4 0.2 0.2 0.8 -0.4
0028 -0.1 -0.4 0.7 0.9 1.2 -0.8 -0.9 0.4 0.4 1.4 0.3 0.8 -0.1 -0.4 0.6 0.1 1.6 -1.2 -1.7 -0.9
Select residue pair below:
i_j Score Prob
0028_0041 2.390 1.00
0004_0028 1.713 1.00
0003_0028 0.566 0.38
0028_0043 0.430 0.19
Local Interactions:
i_j Score Prob
0026_0028 0.534 0.33
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M A P W A ...
Page generated in 0.0054 seconds.