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Coupling matrix for [V:0088] and [P:0204]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 0 0 0 0 0 -0.1 0.9 -0.1 0 0 0 0 0 0 0 -0.3 0
F 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
I -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.4 0.1 0.9 -0.1 -0.1 -0.1 -0.1 -0.2 -0.1 -0.1 1.4 -0.1
L 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
V -0.1 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 1.5 -0.1 -0.2 -0.2 -0.2 -0.2 -0.2 0.6 -0.2 -0.2 1.8 -0.2
M 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
W 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
Y 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
D 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
E 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
K 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
R 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
H 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
N 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
Q 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
G 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0
C 0.5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.2 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0088 0.4 -0.2 0.9 -0.2 1.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 -0.2 0.2
0204 0.2 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 -0.5 1.3 1.3 0.9 -0.5 -0.5 -0.5 -0.5 0.4 -0.5 -0.5 3 -0.5
Select residue pair below:
i_j Score Prob
0088_0204 0.898 0.33
Local Interactions:
i_j Score Prob
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Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M D K L R ...
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