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Coupling matrix for [Q:0023] and [I:0172]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0.4 -0.5 0.4 0.2 -0.1 0 -0.1 0 0 0.4 -0.1 -0.1 -0.1 -0.1 0 -0.1 0 0 0.6
F 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I 0 0 0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
L 0 -0.1 0 0.2 0 0.3 0 0.4 0 0 -0.1 -0.1 -0.1 -0.1 0.3 0 -0.1 0 0 -0.2
V 0 0 -0.2 0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
M 0 0 0.2 -0.1 -0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D 0 0 -0.2 -0.2 -0.2 0 0 0 0 0 0 0 0 0 0.5 0 0 0 0 0
E 0 0 0.7 -0.2 0.4 -0.1 0 0 0 0 -0.1 -0.1 0 0 -0.1 0 0 0 0 -0.1
K 0 0 0.6 -0.1 0.1 -0.1 0 -0.1 0 0 -0.1 -0.1 0.4 -0.1 -0.1 0 0 0 0 -0.1
R 0 -0.1 0.7 -0.6 0.1 0.3 0 -0.1 0 0 -0.1 -0.1 -0.1 -0.1 -0.1 0 0.3 0 0 0
H 0 0 0 0.4 -0.4 0 0 0 0 0 0 -0.1 0 0 -0.1 0 0 0 0 0.4
N 0 0 0 0 0.3 -0.1 0 0 0 0 0 -0.1 0 0 -0.1 0 0 0 0 0.3
Q 0 -0.1 0.5 -0.2 0.2 -0.1 0 -0.1 0 0 -0.1 0.7 0 0 -0.1 0 0 0 0 -0.2
S 0 -0.1 -0.3 0.4 0.1 -0.1 0 0 0 0 -0.1 0.2 -0.1 0.5 0 0 0 0 0 -0.1
T 0 0 0.2 0 0.1 0 0 0 0 0 0 0.1 0 0 0 0 0 0 0 -0.1
G 0 0 -0.2 0.6 0.4 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 -0.1
P 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
C 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0023 1.2 -0.6 -0.3 0.7 -0.5 -0.3 -0.6 -0.6 -0.3 0.3 0.3 0.3 0.1 0.5 0.7 0.6 0.2 0.3 -0.6 -0.6
0172 -0.3 -0.1 1 0.6 0.8 -0.1 -0.3 -0.1 -0.3 -0.3 -0.1 0.2 -0.1 -0.1 0.1 -0.3 -0.1 -0.3 -0.3 0.2
Select residue pair below:
i_j Score Prob
0172_0184 2.131 0.99
0148_0172 1.759 0.94
0172_0214 1.063 0.49
0172_0175 1.005 0.43
0150_0172 0.862 0.30
0023_0172 0.775 0.23
0088_0172 0.751 0.21
0081_0172 0.721 0.19
Local Interactions:
i_j Score Prob
See all coupling residues
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Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M D K L R ...
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