May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RatApobecStart Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [N:0023] and [P:0088]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 0 0 0 0 0 0 0 -0.1 0.1 0 0 0 -0.1 0 0 0.2 0
F 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 -0.1 0
I 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 -0.1 0
L 0 0 0 0 0 0 0 0 0 -0.1 -0.2 -0.2 -0.1 0 0.4 0.3 -0.1 0 0.1 0
V 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 -0.1 0
M 0 0 0 0 0.3 0 0 0 0 0 -0.1 -0.1 0 0 0 -0.1 0 0 -0.1 0
W 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 -0.1 0
Y 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0 0 0 -0.1 0
D -0.1 0 -0.1 0 -0.1 0 0 0 -0.1 -0.1 1.3 0.4 -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.4 -0.1
E -0.2 -0.1 -0.2 -0.1 -0.2 -0.1 -0.1 -0.1 -0.2 0.6 0.4 0.9 -0.2 0.3 0 1.1 0.2 -0.3 -0.4 -0.2
K -0.2 -0.1 0.2 -0.1 0.1 -0.1 -0.1 -0.1 -0.1 0.1 -0.4 0.2 0.2 0 0 -0.5 -0.1 0.6 1.3 -0.1
R 0 0 0 0 -0.1 0 0 0 -0.1 -0.1 -0.2 -0.2 -0.1 -0.1 -0.1 0.2 -0.1 0 1.1 0
H 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 -0.1 0 0 0.3 0
N 0 0 0 0 0 0 0 0 0 -0.1 -0.2 0.5 -0.1 0 0.4 0.2 -0.1 0 -0.2 0
Q 0.4 0 -0.1 0 -0.1 0 0 0 -0.1 -0.1 0.3 -0.5 0.3 -0.1 -0.2 0.2 -0.2 -0.1 0.7 0.4
S 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0 0 -0.1 0.5 0 -0.2 0
T 0 0 0 0 -0.1 0 0 0 0.4 -0.1 -0.2 -0.2 0.7 0.1 -0.1 -0.2 0.3 -0.1 -0.4 0
G 0 0 0 0 0 0 0 0 0 0 -0.1 0.3 0 0 0 -0.1 0 0 -0.1 0
P 0 0 0 0 0 0 0 0 0 0 0.7 -0.1 0 0 0 -0.1 0 0 -0.2 0
C 0 0 0 0 0 0 0 0 0 0 -0.1 0.3 0 0 0 -0.1 0 0 -0.1 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0023 -0.3 -0.6 -0.6 0.1 -0.6 -0.4 -0.6 -0.6 0.6 1.8 1.4 0.1 -0.3 0.3 1 -0.3 0 -0.3 -0.1 -0.3
0088 -0.5 -0.8 -0.5 -0.8 -0.3 -0.8 -0.8 -0.8 -0.4 0.1 1.3 1.5 0.3 -0.2 0.1 1.4 0.3 -0.2 2 -0.5
Select residue pair below:
i_j Score Prob
0023_0088 1.023 0.52
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: H E F E V ...

Page generated in 0.0105 seconds.