May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
RatApobecStart Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [E:0004] and [D:0008]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0 0
F 0 0 0 0 0 0 0 -0.1 -0.1 0 0.2 0 0 -0.1 0 0.3 0 -0.1 0 0
I 0 0 0 0 0 0 0 -0.1 0.1 0 0.3 -0.1 0.3 -0.2 0 -0.1 0.1 0.4 0 -0.1
L 0 0 0 0 0 0 0 -0.1 -0.1 0 0.6 -0.1 0.4 -0.2 0 -0.1 0 -0.1 0 0
V 0 0 0 0 0 0 0 -0.1 -0.1 0 -0.1 0 0 0.5 0 0 0 -0.1 0 0
M 0 0 0 0 0 0 0 0 -0.1 0 0.2 -0.1 0 -0.1 0 0 0 -0.1 0 0
W 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0 0
Y 0 -0.1 -0.1 0 0 0 0 0.3 -0.2 0.5 -0.1 -0.2 0.1 -0.1 0 0.3 -0.1 -0.3 -0.1 0.8
D 0 0 0 0 0 0 0 0 0.2 0 -0.1 0 0 -0.1 0 0 0 0 0 0
E 0 -0.1 -0.1 0 0 0 0 -0.1 0.9 -0.1 0.1 -0.1 -0.1 0.5 0 -0.2 -0.1 0.3 -0.1 -0.1
K 0 0.3 -0.1 0 0 0 0 -0.1 -0.3 -0.1 0.4 0.6 -0.2 -0.3 0 0.3 -0.1 0.4 -0.1 -0.1
R 0 0 0.4 0 0 0 0 -0.1 0.2 -0.1 0 -0.1 -0.1 0 0 -0.1 0 0.1 0.2 -0.1
H 0 0 0 0 0 0 0 0 -0.1 0 -0.1 -0.1 0 -0.1 0 0.3 0 -0.1 0.2 0
N 0 0 0 0 0 0 0 0 -0.1 0 0.2 0 0 -0.1 0 0 0 0.2 0 0
Q 0 0 0 0 0 0 0 0 0.3 0 0 -0.1 0 -0.1 0 -0.1 0 -0.1 0 0
S 0 0 0 0 0 0 0 0.7 0 -0.1 -0.3 0.3 -0.1 0.1 0 -0.1 -0.1 -0.1 0 -0.1
T 0 0 -0.1 0 0 0 0 -0.1 -0.2 -0.1 -0.3 0.5 -0.1 0.8 0 -0.1 0.5 -0.2 0 -0.1
G 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0 0
P 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0 0
C 0 0 0 0 0 0 0 0 -0.1 0 -0.1 0 0 -0.1 0 0 0 0.2 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0004 -0.5 -0.1 0.6 0.1 -0.2 -0.3 -0.5 0.6 -0.3 0.8 0.4 0.1 -0.2 -0.1 -0.2 0.2 0.1 -0.5 -0.5 -0.3
0008 -0.4 -0.2 -0.2 -0.4 -0.4 -0.4 -0.4 0 0.6 -0.2 0.4 0.3 0.1 0.9 -0.4 0.3 -0.1 0.3 -0.2 0
Select residue pair below:
i_j Score Prob
0005_0008 1.087 0.58
0004_0008 1.063 0.56
0008_0011 0.966 0.45
0008_0097 0.904 0.39
0008_0081 0.775 0.27
Local Interactions:
i_j Score Prob
0008_0010 1.327 0.80
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: H E F E V ...
Page generated in 0.0111 seconds.