May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [M:0135] and [E:0147]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.1 0.1 0 -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 -0.1
F 0.3 0.1 -0.1 -0.1 0 0.6 0 -0.1 0 0 0 0 0 0 -0.1 0 0 -0.1 0 -0.1
I 0 0.2 0 -0.2 -0.1 -0.1 0 -0.1 0 -0.1 0 0 0 0 0.1 0 0 0.5 0 -0.1
L -0.1 0.1 -0.1 0.4 0.5 -0.1 -0.1 -0.1 0 0 0 0 -0.1 0 0.1 -0.1 -0.1 -0.1 0 0.1
V 0.1 -0.2 0 0.4 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
M -0.2 1 -0.4 -0.3 -0.1 -0.2 -0.1 0.1 0 0.5 0 0.1 -0.1 0 -0.1 -0.1 -0.1 -0.2 0 0
W 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 -0.1 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0.4 0 0 0 -0.1
D -0.1 -0.1 0 -0.2 -0.1 0 0.3 0.2 0 0 0 0 0.2 0 -0.1 0 0 0 0 0.1
E 0 -0.1 0 -0.1 -0.1 0 0 -0.1 0 0 0 0 0.1 0 -0.1 -0.1 0.3 0.2 0 0.1
K 0.2 -0.1 -0.2 0.1 0.2 -0.1 -0.1 -0.2 0 -0.1 0 0 0 0 0.2 0.2 -0.1 -0.1 0 0.1
R 0.1 -0.1 0 0.5 -0.1 0 0 -0.1 0 0 0 0 0 0 0.1 -0.1 0 0 0 -0.1
H 0 -0.1 0 -0.1 0 0 0 0 0 0.1 0 0 0 0 0.2 0 0 0 0 -0.1
N -0.1 -0.1 0 0.5 -0.1 -0.1 0 0.1 0 0 0 0 -0.1 0 -0.1 -0.1 0 -0.1 0 0.5
Q 0.2 0.1 0 -0.1 -0.1 0 0 0 0 0 0 0 -0.1 0 0.1 0.2 0 0 0 -0.2
S -0.1 -0.1 0.4 0 -0.1 0 0 -0.1 0 0 0 0 0 0 0 -0.1 0 0 0 0.1
T -0.1 -0.1 0 -0.1 0 0 0 0.3 0 0 0 0 0 0 0 0 0 0 0 0
G -0.2 -0.1 0.2 0.1 0.3 0.2 0.2 -0.2 0 -0.1 0 0 0.2 0 -0.1 -0.2 -0.1 -0.1 0 0
P 0 -0.1 0 -0.1 -0.1 0 0 0.4 0 0 0 0 0 0 -0.1 0 0.3 0 0 -0.1
C 0.2 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0135 0.1 0.3 -0.1 0.8 -0.1 -0.4 -0.4 -0.2 0 0 0.1 0 0 0.2 0 -0.2 -0.1 0.2 -0.1 -0.3
0147 0.3 0.2 0.2 0.4 -0.1 0.2 -0.1 0.5 -0.4 0.1 -0.4 -0.3 -0.1 -0.4 0.1 -0.1 0 -0.1 -0.4 0.2
Select residue pair below:
i_j Score Prob
0135_0147 1.640 0.98
0144_0147 1.291 0.90
0122_0147 1.096 0.78
0143_0147 1.067 0.75
0084_0147 0.979 0.66
0071_0147 0.973 0.65
0147_0165 0.874 0.53
0147_0160 0.834 0.48
0073_0147 0.794 0.42
Local Interactions:
i_j Score Prob
0147_0148 1.600 0.98
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0199 seconds.