May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [E:0131] and [Q:0145]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 0 -0.1 -0.1 0 0 -0.1 0.5 0 -0.2 -0.2 0.4 -0.1 -0.3 -0.1 0.2 0 0 0
F 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 0 0 0 0 0
I 0.3 0.4 0 -0.1 -0.1 -0.1 0 -0.1 -0.3 -0.4 1.1 0.1 -0.1 0.1 -0.2 -0.2 -0.2 0 0 0
L -0.1 0 0 -0.1 -0.1 -0.1 0 1.5 -0.4 0.3 -0.3 -0.3 -0.1 0.1 -0.4 -0.2 0.5 0 0 0
V 0.4 0 0 0 0 0 0 0 -0.1 -0.2 0 -0.1 0 -0.1 -0.1 0 0 0 0 0
M 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 0 0 0 0 0
W 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 0 0 0 0 0
Y 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 0 0 0 0 0
D -0.1 0 0 -0.1 -0.1 0 0 -0.1 -0.3 0 -0.2 0.2 0.4 0.2 0.2 -0.1 -0.1 0 0 0
E 0.3 -0.1 0 -0.1 -0.1 -0.1 0 -0.2 0 0.4 0.1 -0.1 -0.1 -0.1 0.5 -0.3 0.2 0 0 -0.1
K 0.6 -0.1 -0.1 -0.2 0.1 0.3 -0.1 -0.3 1.3 -0.4 0 -0.3 -0.2 -0.5 0.1 0.3 -0.4 -0.1 -0.1 -0.1
R -0.2 -0.1 -0.1 -0.2 0 -0.1 -0.1 -0.3 -0.1 0.8 -0.3 0.7 -0.2 0.4 0.3 -0.4 0.3 -0.1 -0.1 -0.1
H -0.1 0 0 -0.1 0.3 -0.1 -0.1 -0.2 -0.6 -0.2 -0.2 0.6 -0.1 0.4 0.3 0.1 0.1 0 -0.1 0
N -0.1 0 0 -0.1 -0.1 0 0 -0.1 0.5 0 -0.3 -0.2 -0.1 0 0.2 0.3 -0.1 0 0 0
Q -0.3 -0.1 -0.1 -0.3 1 -0.1 -0.1 -0.5 1.1 0.2 0.4 -0.8 -0.2 0.6 0.3 -0.2 -0.1 0 -0.1 -0.1
S 0.1 -0.1 -0.1 -0.2 -0.3 -0.1 -0.1 0.4 0.1 0.3 0.7 -0.2 -0.2 -0.3 -0.1 1 -0.4 -0.1 -0.1 -0.1
T -0.5 -0.1 -0.1 1.1 -0.3 0.1 -0.1 0.4 -0.7 -0.3 -0.3 1 0.3 0.3 -0.7 0.6 -0.2 -0.1 0.3 0.3
G -0.1 0 0 0.4 -0.1 -0.1 0 -0.1 -0.3 0 0.2 0.6 -0.1 -0.2 0.2 0.2 -0.2 0 0 0
P -0.1 0 0 -0.1 -0.1 -0.1 0.5 0 0.5 0.8 -0.3 0 -0.1 -0.1 -0.3 -0.3 0.2 0 0 0
C -0.1 0 0 0 0 0 0 -0.1 -0.2 0.1 0 -0.1 0 -0.1 0.6 -0.1 -0.1 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0131 -0.3 -1 0.3 0.2 -0.7 -1 -1 -1 -0.3 0.5 0.6 0.5 0.1 -0.2 0.5 0.9 1.6 0.1 0.5 -0.4
0145 -0.1 -0.8 -1 -0.4 -0.2 -0.7 -0.8 0.2 1 1.4 1.2 0.9 -0.3 0.7 1 0.6 0.5 -1 -0.8 -0.8
Select residue pair below:
i_j Score Prob
0131_0145 0.798 0.43
Local Interactions:
i_j Score Prob
0129_0131 0.799 0.43
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0107 seconds.