May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [L:0098] and [N:0100]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.5 -0.1 -0.2 -0.4 0 -0.1 -0.1 -0.1 0 0
F -0.1 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.7 0.7 -0.3 -0.1 0 -0.1 -0.1 -0.1 0 -0.1
I 0 0 0 0 0 0 0 0 0 0 0 0.4 -0.1 -0.3 0 0 -0.1 -0.1 0 0
L -0.1 0 0 0 0 0 0 -0.1 -0.1 0 -0.3 0.3 -0.2 0.3 0 -0.1 -0.1 0.4 0 0
V 0 0 0 0 0 0 0 -0.1 -0.1 0 0.6 -0.1 -0.1 -0.4 0 0 0.4 -0.1 0 0
M 0 0 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.2 0 0 0 -0.1 0 0
W 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 -0.1 0 0 0 0 0 0
Y 0.5 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 1.3 0.5 -0.4 -0.4 -0.2 0.6 -0.1 0.6 -0.3 0.3 -0.1 -0.1
D 0 0 0 0 0 0 0 -0.1 -0.1 0.1 1.2 -0.1 -0.1 -0.4 0 -0.1 -0.1 -0.1 0 0
E 0.4 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.3 0.7 -0.2 -0.1 0 -0.1 -0.1 0.3 0 0
K 0 0 0 0 0 0 0 0 -0.1 0 -0.1 -0.1 0.1 0.1 0 0 0 -0.1 0 0
R 0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.7 0.5 -0.2 0 -0.3 -0.5 -0.5 0.4 -0.2 1.2 0.5 -0.1 -0.1
H -0.3 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.8 0.1 0.3 -0.7 0.3 0.4 1.4 -0.1 0.3 -0.2 0.3 -0.1 -0.2
N -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 -0.3 -0.2 -0.5 -0.3 2.3 0.5 -0.1 -0.2 0.4 -0.3 -0.1 0.8
Q -0.1 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.3 -0.1 0.6 0.4 0 -0.1 -0.1 -0.1 0 0
S 0 0 0 0 0 0 0 0 -0.1 0 0.2 -0.1 -0.2 0.1 0 0 -0.1 -0.1 0 0
T -0.1 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.3 -0.1 -0.3 1.1 0 -0.1 -0.1 -0.1 0 -0.1
G 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 -0.1 0 0 0 0 0 0
P -0.1 0 0 0.4 0 0 0 -0.1 -0.2 -0.1 -0.5 -0.2 -0.4 -0.7 -0.1 -0.1 -0.2 -0.2 0 -0.1
C 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 -0.2 0 0.2 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0098 -0.2 0 -0.6 -0.2 -0.3 -0.8 -0.9 1.4 -0.2 0 -0.6 1.2 1.9 1.4 0.2 -0.5 0.1 -0.9 0.9 -0.9
0100 -0.1 -0.8 -0.8 -0.5 -0.8 -0.8 -0.8 -0.1 0.3 -0.2 1.4 0.5 0.7 1.9 -0.6 -0.2 0.4 0.5 -0.8 -0.4
Select residue pair below:
i_j Score Prob
Local Interactions:
i_j Score Prob
0098_0100 0.906 0.57
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0105 seconds.