May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

Apobec Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [M:0091] and [I:0092]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
F -0.2 0 0 -0.1 0.4 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
I 0 -0.3 0.4 0.8 -0.1 -0.3 -0.2 0.2 -0.2 0.4 -0.2 0.8 -0.2 -0.2 0.4 -0.2 0.4 0 -0.2 0.4
L 0.6 -0.2 0.1 0.1 1.2 -0.3 -0.1 -0.7 -0.1 -0.1 -0.1 -0.5 -0.1 -0.1 -0.2 0.8 0.8 0.4 -0.1 0
V 1.6 -0.2 -0.1 -0.3 0.6 0.5 -0.1 -0.3 -0.1 -0.1 -0.1 0.4 0 -0.1 -0.1 -0.4 0.2 -0.2 -0.1 -0.1
M 0.7 0.6 0.1 -0.4 -0.5 -0.1 0 1.4 0 -0.1 0 -0.2 0 0 -0.1 -0.2 0 -0.1 0 -0.2
W -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
E -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
K -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
R -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
H -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Q -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
S -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
T 0 0 -0.1 0.8 -0.2 0 0 -0.1 0 0 0 -0.1 0 0 0 -0.1 -0.1 0 0 0
G -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
P -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
C -0.1 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0091 -0.6 -0.3 3 2.6 2 1.4 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 0 -0.6 -0.6 -0.6
0092 1.8 -0.3 0.4 1 1.2 -0.4 -0.7 0.3 -0.7 -0.2 -0.7 0.4 -0.7 -0.7 -0.3 0.3 1.3 -0.1 -0.7 -0.1
Select residue pair below:
i_j Score Prob
0091_0113 0.834 0.48
Local Interactions:
i_j Score Prob
0091_0092 0.902 0.56
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...

Page generated in 0.0961 seconds.