May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

Apobec Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [H:0074] and [L:0132]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0.3 0.9 0.5 -0.2 0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
F 0 -0.1 0.6 -0.6 1 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I 0 0 -0.2 0.4 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
L 0 0 -0.2 -0.3 0.6 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
V 0 -0.1 -0.3 0.4 0.3 0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
M 0 0 -0.1 -0.2 0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 0 0.6 -0.3 0.3 -0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 -0.1 0.2 0.2 -0.3 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D 0 0 -0.1 0.1 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
E 0 0 0.2 -0.1 -0.3 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
K 0 0 -0.1 -0.1 -0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
R 0 0 -0.2 -0.2 0.5 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
H 0 0.8 -0.1 0.4 -0.2 0.4 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
N 0 -0.1 0.2 1.1 -0.1 -0.3 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
Q 0 0 -0.1 -0.2 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
S 0 -0.1 0.1 1.1 0.1 -0.3 0 0 0 0 0 0 0 0 0 0.4 0 0 0 0
T 0 0 -0.2 -0.3 -0.2 0.9 0 0 0 0 0 0 0 0 0 0 0 0 0 0
G 0 -0.1 0.2 -0.9 -0.7 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
P 0 -0.2 0 0.6 0.7 0.2 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
C 0 0 0 -0.2 0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0074 0.9 0.7 -0.5 -0.2 0.4 -0.6 -0.1 0.4 -0.7 -0.6 -0.8 -0.4 0.8 -0.1 -0.6 0.9 -0.1 0.9 0.9 -0.5
0132 -0.6 0.1 2 2 2.3 1.1 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.6 -0.3 -0.6 -0.6 -0.6 -0.6
Select residue pair below:
i_j Score Prob
0074_0090 0.922 0.59
0074_0132 0.868 0.52
Local Interactions:
i_j Score Prob
0074_0075 0.859 0.51
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...

Page generated in 0.009 seconds.