May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [T:0069] and [K:0095]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
F 0 0 -0.1 -0.1 0.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
L 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
V 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
M 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
E 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
K 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
R 0 0 -0.2 0.4 -0.1 0 0 0 0 0 0 0 0.4 0 0 0 0 0 0 0
H 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N -0.1 -0.2 1.1 1.4 -0.2 -0.2 0 -0.3 0 0 -0.1 -0.1 -0.2 0 0 -0.1 -0.2 0 0 -0.1
Q 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
S 0 0 0.1 1.8 0.6 1 -0.2 -0.2 -0.2 -0.2 -0.6 0 0.2 -0.2 -0.2 0 -0.1 -0.2 -0.2 -0.3
T 0.2 0.4 0.4 -0.6 0.4 -0.4 -0.1 -0.4 -0.1 -0.1 1.1 -0.1 -0.2 -0.1 -0.1 0.2 0.6 -0.1 -0.1 0.3
G 0 0 0.4 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
P 0 -0.1 -0.2 -0.3 -0.1 -0.1 0 1.3 0 0 -0.1 0 -0.1 0 0 0 -0.1 0 0 0
C 0 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0069 -0.4 -0.1 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 0.4 -0.4 0.7 -0.4 2.4 1.8 -0.1 0.2 -0.4
0095 -0.2 0.1 1.8 2.7 1 0.3 -0.7 0.2 -0.7 -0.7 0.4 -0.5 0.1 -0.7 -0.7 -0.3 0.2 -0.7 -0.7 -0.5
Select residue pair below:
i_j Score Prob
0069_0095 1.952 1.00
0066_0069 1.042 0.72
0025_0069 0.797 0.43
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0118 seconds.