May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

Apobec Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [W:0062] and [I:0064]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 -0.1 0 0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
F 0 -0.4 0.7 -0.1 0.3 -0.1 0 -0.1 0 0 -0.1 0 0 0.4 0 -0.1 0 0 -0.1 0
I 0 1.8 -0.4 0.2 -0.5 -0.1 0 -0.2 0 0 0 0 0 -0.1 0 0 0 0 0 0
L 0 0.5 -0.2 -0.4 0 0.4 0 0.3 0 0 0 0 0 0 0 0 0 0 0 0
V 0 1.5 -0.5 -0.2 -0.3 -0.1 0 0.8 0 0 -0.1 0 0 -0.1 0 -0.1 0 0 -0.1 0
M 0 -0.1 0.3 -0.1 -0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 -0.2 0 0.7 -0.2 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
Y -0.1 -0.5 0.1 1 1.4 0.5 -0.1 0 -0.1 -0.1 -0.2 -0.1 -0.1 -0.3 -0.1 -0.2 -0.1 -0.1 -0.2 -0.1
D 0 -0.1 -0.3 -0.1 -0.3 0 0 0 0 0 0.5 0 0 0 0 0 0 0 0 0
E 0 -0.1 -0.4 -0.1 0.8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
K 0 -0.1 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
R 0 -0.3 0.5 0.1 0.5 -0.1 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
H 0 -0.1 0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N 0 -0.1 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Q 0 -0.2 -0.5 -0.2 0.5 0 0 0 0 0 0 0 0 0 0 0.5 0 0 0 0
S 0 -0.1 0.6 -0.1 -0.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
T 0 -0.1 0.2 -0.2 0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
G 0 -0.2 0.7 0.2 -0.2 -0.1 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0
P 0 -0.1 -0.2 -0.1 -0.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0.5 0
C 0 -0.3 0.8 0.5 0.1 0.1 0 -0.2 0 0 -0.1 0 0 -0.1 0 -0.1 0 0 -0.1 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0062 -0.5 0.3 1 0.4 1 -0.4 0 1.1 -0.4 -0.2 -0.7 0.6 -0.5 -0.8 -0.3 -0.2 -0.3 0.2 -0.6 0.5
0064 -0.5 0.6 2 1.4 1.1 0.3 -0.5 0.2 -0.5 -0.5 -0.2 -0.5 -0.5 0 -0.5 -0.2 -0.5 -0.5 -0.3 -0.5
Select residue pair below:
i_j Score Prob
0064_0088 1.008 0.69
0017_0064 0.907 0.57
0064_0071 0.811 0.45
Local Interactions:
i_j Score Prob
0062_0064 0.802 0.43
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...

Page generated in 0.2948 seconds.