May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [L:0047] and [T:0065]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 -0.1 0.2 0 0 0 0 0 0 0 0 -0.1 0 0 0 -0.2 0 0 0
F 0.1 0.5 0.8 -0.2 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.3 -0.6 -0.1 -0.1 -0.1 1.3 -0.1 -0.1 -0.1
I -0.1 0.2 0.8 -0.1 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.2 -0.4 -0.1 -0.1 0.4 0.5 -0.1 -0.1 -0.1
L -0.1 -0.2 -0.5 0 -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.3 0.2 -0.1 -0.1 -0.2 1.9 -0.2 -0.1 -0.1
V 0.5 -0.1 -0.1 0 0.3 0 0 0 0 0 0 0 -0.1 0 0 0 -0.1 0 0 0
M 0 0 -0.2 0 0.2 0 0 0 0 0 0 0 -0.1 0 0 0 0.6 0 0 0
W 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
Y -0.1 0 0.3 0 -0.1 0 0 0 0 0 0 0 -0.1 0 0 0 -0.3 0 0 0.5
D 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
E 0 0 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0
K 0 0 0 0 0.7 0 0 0 0 0 0 0 -0.1 0 0 0 -0.4 0 0 0
R -0.1 0 -0.3 0.3 -0.2 -0.1 -0.1 0.2 -0.1 -0.1 -0.1 -0.1 2.2 -0.1 -0.1 0.1 -1.1 -0.1 0.4 -0.1
H 0 0 0.3 0 -0.1 0 0 0 0 0 0 0 -0.1 0 0 0 -0.2 0 0 0
N 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
Q 0 0 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0.1 0 0 0
S 0 0 -0.1 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 -0.3 0.5 0 0
T 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
G 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
C 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0047 -0.4 2.1 1 1.2 0.1 0.1 -0.6 0 -0.6 -0.5 -0.1 1.7 -0.3 -0.6 -0.4 -0.3 -0.6 -0.6 -0.6 -0.6
0065 0 0.2 1.1 0.1 0.7 -0.5 -0.5 -0.2 -0.5 -0.5 -0.5 0 0.6 -0.5 -0.5 0 1.6 -0.2 -0.2 -0.2
Select residue pair below:
i_j Score Prob
0047_0143 0.974 0.65
0047_0065 0.929 0.60
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.1624 seconds.