May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [K:0039] and [Y:0067]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.4 -0.1 0 0 0 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0
F 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
I 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
L 0 -0.6 0 0 0 0 0 0.1 0 0 0 0 0.4 0 0 0 0.4 0 0 0
V 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
M 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
W 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 -0.2 0 0 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
D -0.1 0 -0.1 0.6 0 0.2 -0.1 0.6 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1
E 0 0.5 0 0 0 0 0 -0.3 0 0 0 0 0 0 0 0 0 0 0 0
K 0 -0.7 0 -0.1 0.1 0 0 0.8 0 0 0 0 0 0 0 0 0 0 0 0
R 0 0.6 0 -0.1 0 0 0 -0.2 0 0 0 0 -0.1 0 0 0 0 0 0 0
H 0 -0.4 0 0 0 0 0 0.7 0 0 0 0 0 0 0 0 0 0 0 0
N 0 -0.1 0 -0.1 0 0 0 0.7 0 0 0 0 0 0 0 0 0 0 0 0
Q 0 0.4 0 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
S 0 0.3 0 0.4 0 0 0 0.1 0 0 0 0 0 0 0 0 0 0 0 0
T 0 0.2 0 -0.1 0.2 0 0 0.2 0 0 0 0 0 0 0 0 0 0 0 0
G -0.1 1.1 0 -0.1 -0.1 0 0 -0.2 0 0 0 0.3 -0.2 0 0 0.3 -0.1 0 0 0
P 0 0.4 0 -0.1 0 0 0 0.1 0 0 0 0 0.3 0 0 0 0 0 0 0
C 0 0.1 0 0 0 0 0 -0.3 0 0 0 0 0 0 0 0 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0039 0.2 -0.8 -0.8 0 -0.8 -0.8 -0.8 -0.8 0.8 0 0 0.1 0.2 0.5 0.2 0.8 0.5 1.2 0.8 -0.6
0067 -0.1 1.7 -0.3 0.2 -0.1 -0.1 -0.3 2.2 -0.3 -0.3 -0.3 -0.1 0 -0.3 -0.3 -0.1 -0.1 -0.3 -0.3 -0.3
Select residue pair below:
i_j Score Prob
0039_0067 1.493 0.96
0039_0044 0.909 0.57
0039_0059 0.803 0.44
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0088 seconds.