May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

Apobec Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [K:0039] and [N:0059]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.5 0 0 -0.1 -0.1 0 0 -0.1 -0.3 -0.1 -0.2 -0.1 -0.1 -0.2 -0.1 0.2 -0.1 0.4 0.4 0
F 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
I 0 0 0 0 0 0 0 0 -0.1 0 0 0.1 0 -0.1 0 -0.1 0 -0.1 0 0
L -0.2 0 0 -0.1 -0.1 -0.1 0 -0.1 0.1 -0.1 0.2 -0.1 -0.1 -0.1 0 -0.2 -0.1 1.1 -0.1 0
V 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
M 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
W 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
Y 0 0 0 0 0 0 0 0 0.1 0 0 0 0 -0.1 0 -0.1 0 -0.1 0 0
D 0 -0.1 -0.1 0.1 -0.4 -0.2 -0.1 -0.3 -0.2 0.3 2.1 1.5 -0.3 -0.1 -0.1 -0.4 -0.6 -0.3 -0.4 -0.1
E -0.2 0 0 -0.1 -0.1 0 0 0.3 -0.3 -0.1 -0.2 -0.1 0 0.5 0.6 -0.2 -0.1 -0.2 -0.1 0.4
K -0.3 0 0 -0.1 -0.1 -0.1 0 -0.1 0.7 -0.2 0 -0.2 0.1 0.1 -0.1 0.4 0.4 -0.3 -0.1 -0.1
R -0.1 0 -0.1 0.2 -0.2 -0.1 0 -0.2 0.8 -0.2 -0.4 -0.2 -0.2 0 0 -0.3 0.6 0.7 -0.1 -0.1
H -0.3 0 0 -0.1 -0.1 0.9 0 -0.1 -0.4 -0.2 0.3 -0.2 -0.1 0.9 -0.1 0.2 -0.2 -0.4 -0.1 0
N -0.3 -0.1 0.4 -0.1 -0.1 -0.1 -0.1 -0.1 0.3 -0.4 -0.3 0.3 -0.1 0.2 -0.1 -0.3 0.5 0.1 0.6 -0.1
Q 0.5 0 0 -0.1 -0.1 -0.1 0 0.8 -0.1 -0.1 -0.3 -0.2 -0.1 0.1 -0.1 0 0.2 -0.1 -0.1 -0.1
S -0.3 -0.1 -0.1 -0.1 0.3 -0.1 -0.1 0.3 0.2 1 -0.1 0 -0.2 0 0.1 0.3 -0.3 -0.4 -0.2 -0.1
T 0.4 0 -0.1 -0.1 -0.1 -0.1 0 -0.1 -0.2 0.2 -0.4 -0.3 -0.1 -0.1 -0.1 1.6 -0.2 -0.4 0.5 -0.1
G 1.1 -0.1 -0.2 0 1.3 -0.2 -0.1 -0.4 -0.6 -0.5 -0.2 0.3 0.7 -0.7 -0.3 0.2 0.1 0.3 -0.3 -0.2
P -0.5 -0.1 -0.1 0.8 -0.2 -0.2 -0.1 0.1 0.6 0.7 -0.2 -0.3 0.4 0 -0.2 -0.4 0.1 0.4 -0.2 -0.1
C -0.1 0 0 0 0 0 0 0 0.2 0 -0.1 0 0.2 -0.1 0 -0.1 0 -0.1 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0039 0.2 -0.8 -0.8 0 -0.8 -0.8 -0.8 -0.8 0.8 0 0 0.1 0.2 0.5 0.2 0.8 0.5 1.2 0.8 -0.6
0059 0.7 -1.1 -0.9 -0.3 -0.3 -0.7 -1.1 -0.3 1.3 0.1 0.8 0.4 -0.2 0.8 -0.5 1 0.2 0.7 -0.3 -0.9
Select residue pair below:
i_j Score Prob
0059_0063 0.934 0.60
0039_0059 0.803 0.44
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...

Page generated in 0.011 seconds.