May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [C:0020] and [Y:0151]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0
F -0.1 -0.1 0 -0.1 -0.1 0 -0.1 -0.1 0.5 0.6 0.3 0.1 -0.1 -0.1 -0.5 -0.1 0 0.1 -0.1 -0.1
I 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.1 0 0
L 0.2 -0.1 0.7 -0.1 1 0.2 -0.1 -0.1 -0.3 0.1 -0.2 -0.3 0.1 -0.1 -0.3 -0.2 -0.1 0 -0.2 0.4
V 0 0 0 -0.1 -0.1 0 0 0 -0.1 0.2 -0.1 -0.1 -0.1 0 0 -0.1 0 -0.3 0.5 0
M 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0.3 0 0 -0.1 0 0
W -0.1 0 0 -0.1 -0.1 0 0.3 -0.1 0.3 0.2 -0.2 -0.1 -0.1 0.1 0.5 -0.1 0 -0.1 0 0
Y -0.2 -0.2 -0.2 -0.1 -0.2 -0.1 -0.1 -0.2 -0.4 -0.4 0.9 0.6 0.1 0.1 1.3 0.2 -0.2 -0.1 0 -0.2
D 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0.3 0 -0.1 -0.1 0 0.5 -0.1 0
E -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.3 -0.1 -0.2 0.2 0 0.3 0.4 -0.1 0.1 0.5 -0.1
K 0.1 0.4 -0.2 0.1 -0.3 -0.1 -0.1 0.3 0.7 0.7 -0.2 -0.1 -0.3 0.1 -0.5 0.1 -0.2 -0.1 -0.4 -0.2
R 0.3 0 0 -0.1 0 0 0 0 0.5 -0.2 -0.1 -0.1 -0.1 0 0.2 -0.1 0 0.1 -0.1 0
H 0 0 0 0 0 0 0 0 0.3 -0.1 0 -0.1 0 0 -0.1 0 0 -0.1 -0.1 0
N 0 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 -0.1 -0.1 0 -0.1 0 0 0.5 -0.1 0
Q -0.1 0 0 -0.1 -0.1 0 0 -0.1 -0.2 0.1 -0.1 -0.1 -0.1 0 -0.1 -0.1 0 0.6 -0.1 0.3
S 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0.3 0 0
T 0 0 0 0 0 0 0 0 -0.1 -0.1 0 0.6 0 0 0 0 0 -0.1 0 0
G 0 0 0 0 0 0 0 0 -0.1 -0.1 0 -0.1 0.4 0 -0.1 0 0 -0.1 0 0
P 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
C -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.1 0.3 -0.3 -0.3 -0.1 0.6 -0.1 -0.1 -0.2 0.3 -0.1 0.2 0.7 0.1
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0020 -0.3 0.1 -0.3 0.3 0 -0.2 0.1 0.9 0 0.5 0.2 0.2 -0.1 0 -0.2 -0.2 -0.1 -0.2 -0.3 0.2
0151 -0.3 -0.6 -0.5 -0.1 -0.2 -0.9 -0.8 -0.5 0.6 1 0.2 0.5 -0.1 -0.7 0.8 0 -0.6 1.7 0.2 -0.6
Select residue pair below:
i_j Score Prob
0020_0158 1.842 0.99
0012_0020 1.588 0.98
0015_0020 1.569 0.98
0013_0020 1.301 0.91
0020_0028 1.243 0.88
0020_0067 1.016 0.70
0020_0151 0.988 0.67
0014_0020 0.948 0.62
0016_0020 0.903 0.56
0020_0029 0.894 0.55
0020_0035 0.891 0.55
0004_0020 0.812 0.45
0020_0152 0.796 0.43
0009_0020 0.789 0.42
Local Interactions:
i_j Score Prob
0019_0020 1.935 1.00
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0176 seconds.