May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [S:0016] and [S:0019]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 0 -0.1 -0.1 0 0 -0.1 0 -0.1 0.4 0.1 0.3 0 -0.1 -0.2 0.3 0 -0.1 0
F 0 0 0 0 0 0 0 0 0 0 -0.2 0.3 0.3 -0.2 0 -0.1 -0.1 0 0 0
I 0 0 0 0 0 0 0 0 0 0 0 0.2 -0.1 -0.1 0 0 -0.1 0 0 0
L 0 0 0 0 -0.1 0 0 0 0 0 -0.2 -0.1 0.1 0.4 0 0.2 -0.1 0 0 0
V 0 0 0 0 0.3 0 0 -0.1 0 -0.1 0.1 0.2 0.3 -0.4 -0.1 0.1 -0.2 0 -0.1 0
M 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0
W 0.4 0 0 0 0 0 0 0 0 0 0.2 -0.1 -0.1 -0.1 0 -0.1 -0.2 0 0 0
Y 0.2 0 0 0 -0.1 0 0 0 0 0 -0.3 -0.2 -0.2 0.3 0 0.6 0 0 -0.1 -0.1
D 0 0 0 0.3 -0.1 0 0 0 0 0 0.2 -0.1 -0.3 -0.1 0 -0.2 0.2 0 0 0
E 0 0 0 0 -0.1 0 0 -0.1 0 0.3 0.4 0.1 -0.3 -0.2 0.4 -0.2 0 0 0 0
K -0.1 0 0 0 0.3 0 0 0.3 0 -0.1 0.2 -0.1 0.2 -0.3 -0.1 -0.2 0.1 0 -0.1 0
R -0.1 0 0 0 -0.2 0 0 -0.1 0 -0.1 -0.3 0.1 0.2 -0.3 -0.1 0.3 0.8 0 0.1 0
H 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0.1 0 -0.1 -0.1 0 0.4 0
N 0 0 0 0 0 0 0 0 0 0 0.1 -0.2 0.3 0 -0.1 0 -0.1 0 0 0.1
Q -0.1 0 0 0 -0.1 0 0 -0.1 0 0 0.2 0.3 0.5 -0.3 0.4 0 -0.2 0 -0.1 0
S -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.2 -0.1 0.2 0 -0.4 -0.5 1.2 0 -0.1 0 -0.1 -0.1 0.1
T 0 0 0 0 -0.1 0 0 0 0 0 0 -0.2 -0.2 -0.2 -0.1 0.2 0.3 0 0 0
G 0 0 0 0 0.2 0 0 0 0 0 -0.2 0 -0.1 0.5 0 -0.1 -0.2 0 0 0
P 0 0 0 0 0.3 0 0 -0.1 0 -0.1 0.1 0.4 0 -0.2 -0.1 -0.1 0.2 0 0 0
C 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 0.1 0 0 -0.1 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0016 0.2 -0.3 -0.4 -0.1 0.1 -0.5 -0.2 0 0.1 0.1 0.3 0.3 0 0.1 0.4 0.3 -0.1 -0.1 0.1 -0.5
0019 -0.2 -0.6 -0.6 -0.4 0 -0.6 -0.6 -0.2 -0.6 -0.2 0.9 0.7 0.8 1 -0.2 0.4 1.4 -0.6 0 -0.4
Select residue pair below:
i_j Score Prob
0019_0158 1.940 1.00
0019_0038 1.572 0.98
0016_0019 1.143 0.82
0019_0029 0.975 0.65
0019_0028 0.907 0.57
Local Interactions:
i_j Score Prob
0019_0020 1.935 1.00
0017_0019 0.861 0.51
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0146 seconds.