May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [R:0013] and [Y:0035]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 -0.1 0 0 0 0 -0.1 0 0 0 -0.1 -0.1 0 0 0.5 0 0 0 0.1 0
F 0 -0.1 0 0 0 0 0 0 0 -0.1 -0.1 -0.1 0.1 0.1 -0.1 0.3 -0.1 0 0 0
I 0 -0.1 0 -0.1 0 0 -0.1 -0.1 0 0 0.1 0.6 0.1 -0.1 -0.1 -0.1 -0.1 0 0.1 0
L 0 0 0 0.3 -0.1 0 0 0.1 0 0 -0.1 0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0 0.1 0
V 0 -0.1 0 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 0 0.2 0
M 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 -0.2 0 -0.1 0.2 0 0 -0.1 0 0 -0.1 -0.1 0 0 -0.1 0 0.1 0 0.4 0
Y 0.1 -0.1 0 0 0 0 0 0 0 0 0.2 0 0 0 -0.1 0 -0.1 0 0 0
D 0.1 -0.2 0 -0.1 0.3 0 -0.1 -0.1 -0.1 0.2 -0.3 -0.2 0 0.1 -0.3 0 0.3 0.5 0.1 0
E -0.1 -0.1 0 -0.1 -0.1 0 -0.1 -0.2 0.7 -0.1 0.1 -0.4 -0.2 0.1 -0.1 -0.2 0.5 -0.1 0 0
K 0.1 0.5 0 0 0.1 0 -0.3 -0.1 -0.1 -0.1 -0.2 0.1 0.2 -0.1 0.2 -0.2 0.2 -0.1 -0.1 0
R -0.1 0 -0.1 -0.3 0.1 0 0 0.1 -0.2 0.2 0.1 0.4 -0.2 -0.3 0.5 0.6 0 -0.1 -0.4 0
H 0 -0.1 0 -0.1 0 0 0 0 0 0 0.5 -0.1 0.3 -0.1 -0.1 -0.1 0 0 -0.1 0
N 0.1 -0.2 0 -0.1 -0.1 0 0.3 0.4 -0.1 -0.2 -0.3 0.1 0.1 0.2 -0.1 0.5 -0.2 -0.1 -0.1 0
Q 0 -0.1 0 0 0 0 0.3 0 0 0 -0.1 -0.1 0.2 -0.1 -0.1 0 -0.1 0 0 0
S 0 0 0 -0.1 -0.1 0 0.1 0.3 -0.1 0.2 0.1 0.1 -0.1 0 0.2 0 -0.1 0 -0.1 0
T 0 0.2 0 0.2 0 0 -0.1 -0.1 -0.1 0 0.1 0.2 -0.1 0.3 -0.1 -0.1 -0.1 0 -0.1 0
G 0 -0.1 0 0 0 0 -0.1 -0.1 0 0.2 -0.1 -0.1 -0.1 0 0.2 -0.1 -0.1 0 0.2 0
P -0.1 0.7 -0.1 0.3 -0.2 0 -0.2 0 -0.2 -0.1 0.3 0.2 0.2 -0.1 0.2 -0.3 -0.2 -0.1 -0.1 0
C 0 0.4 0 -0.1 0 0 0.6 -0.1 0 0 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0 -0.1 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0013 -0.2 -0.3 0.1 -0.1 -0.3 -0.5 0 -0.3 0.1 0.1 0 0.7 -0.1 0.1 -0.3 0.3 0.1 -0.2 0.6 0
0035 -0.2 0.2 -0.4 0.1 0 -0.4 -0.1 0.2 0 0.1 0.3 0.3 0.1 0.1 0.2 0.3 0 -0.4 0.2 -0.6
Select residue pair below:
i_j Score Prob
0009_0013 1.394 0.94
0010_0013 1.325 0.92
0013_0020 1.301 0.91
0013_0016 1.099 0.78
0004_0013 1.097 0.78
0013_0158 0.913 0.58
0007_0013 0.907 0.57
0013_0035 0.832 0.47
Local Interactions:
i_j Score Prob
0013_0015 1.765 0.99
0013_0014 1.722 0.99
0012_0013 1.609 0.98
0011_0013 0.998 0.68
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.012 seconds.