May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
Apobec Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [P:0012] and [Y:0035]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 -0.1 0 -0.1 0 0 0 0.3 0 0.2 -0.1 -0.1 -0.1 -0.1 0 -0.1 0 0 0.2 0
F 0.1 -0.5 -0.1 -0.5 -0.3 -0.1 0.2 -0.1 -0.3 0.1 0.7 0.3 0.2 -0.2 0.5 0 0.2 0.1 -0.1 -0.1
I 0 0 0 0.3 0 0 0 0.1 0 0 -0.1 0 -0.1 0 0 0.1 0 0 -0.1 0
L -0.1 0.3 -0.1 -0.4 0.4 0 -0.1 0 -0.1 0 -0.1 -0.1 0.3 0 0.1 0 0.4 -0.1 -0.2 0
V -0.1 0.4 -0.1 -0.2 -0.1 0 -0.1 -0.2 0.5 -0.1 -0.2 -0.3 0 -0.1 -0.1 0.2 0 0 0 0
M 0 0.3 0 -0.1 0 0 0 0 0 0 -0.1 -0.1 0 0 0 0.3 0 0 -0.1 0
W 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0 0.4 0 0 0.2 0 -0.1 -0.1 0 -0.1 -0.2 0.2 0.1 -0.2 0.2 -0.1 -0.1 0.1 -0.1 0
D 0 -0.2 0 0.4 0 0 0 0 0 0 0 -0.1 0 0 -0.1 -0.1 0 0 0.2 0
E 0 0.2 0 -0.1 0 0 0 0 0 0 0 0 -0.1 0.3 -0.1 0 0 0 -0.1 0
K 0 0 0 0 0 0 0 -0.1 0 0 -0.1 0.1 0.2 -0.1 -0.1 -0.1 0 0 0 0
R 0 0.2 0 0.2 0 0 -0.1 -0.1 -0.1 -0.1 -0.1 0.2 -0.1 0.2 -0.1 0.1 -0.1 0 0.1 0
H 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N 0 -0.2 0 0.4 0 0 0 -0.1 -0.1 -0.1 0.1 0.1 -0.1 0.2 -0.1 -0.1 -0.1 0 0.2 0
Q 0 -0.3 0 -0.1 0 0 0 -0.1 0 0 0.5 0 0 -0.1 0.2 0.2 -0.1 0 0 0
S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
T 0 -0.1 0.3 0.1 0 0 0 -0.1 0 0 -0.1 -0.1 0 0 0 -0.1 0 0 0.1 0
G 0 -0.1 0 0 0 0 0.3 0 0 0 0.2 0 0 0.1 0 -0.1 0 0 -0.2 0
P 0 -0.1 0 -0.1 0 0 0 0.6 0 0.2 -0.1 -0.1 -0.1 0.1 -0.1 -0.1 0 0 -0.1 0
C 0 -0.1 0 0 0 0 0 0.3 0 0 -0.1 0.3 0 -0.1 0 0 0 0 -0.1 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0012 0 -0.2 0 0.2 0.3 0 -0.3 0.1 0 0.1 0.2 0.2 -0.3 0.2 -0.1 -0.3 0.1 0 0.1 0
0035 -0.2 0.2 -0.4 0.1 0 -0.4 -0.1 0.2 0 0.1 0.3 0.3 0.1 0.1 0.2 0.3 0 -0.4 0.2 -0.6
Select residue pair below:
i_j Score Prob
0012_0035 1.169 0.83
0035_0165 1.070 0.75
0004_0035 0.908 0.57
0020_0035 0.891 0.55
0005_0035 0.885 0.54
0009_0035 0.850 0.50
0013_0035 0.832 0.47
0035_0164 0.826 0.47
Local Interactions:
i_j Score Prob
0034_0035 1.633 0.98
0035_0036 0.995 0.67
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...
Page generated in 0.0063 seconds.