May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

Apobec Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [P:0012] and [K:0015]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0 0 0 0 0 0 0 0 0 0 0.2 0 0 -0.1 0 0 0 0 0
F -0.3 0.1 -0.1 -0.1 -0.2 0.1 -0.1 0.4 0.1 0 -0.1 0.1 0.1 0 -0.2 0 0.3 0.2 -0.2 -0.1
I -0.1 0 0 0 0 0 0 0 0 0 0.1 -0.1 0 0 0.2 0.1 0.3 -0.1 0 0
L 1 -0.1 -0.1 -0.2 0.1 0 -0.1 -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.2 -0.2 -0.1 0.3 0.3 -0.1
V 0.3 -0.1 -0.1 -0.1 -0.2 0 -0.1 -0.2 -0.1 -0.1 0.1 0 -0.1 -0.1 0.4 0.4 -0.1 0.1 -0.1 0.2
M 0.1 0 0 0 0.3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Y 0.2 0 0.1 -0.1 -0.1 0 0.4 -0.1 0 0 -0.1 0.5 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0
D -0.1 0 0 -0.1 0.4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
E -0.1 0 0 0.2 -0.1 0 0 0 0 0 0 -0.1 0 0 0 0.3 -0.1 0 0.2 0
K -0.1 0 0.3 0.1 0 0 0 0.4 0 0 0 -0.1 0 0 -0.1 -0.1 0 0 0 0
R -0.2 0 -0.1 0.6 -0.1 0 0 0 0 0 -0.1 0.3 0 0 -0.1 0 -0.1 0.2 -0.1 0
H 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N -0.1 0 0.2 -0.1 0.5 0 -0.1 -0.1 0 0 0.1 -0.1 0 0.5 -0.1 -0.1 -0.1 -0.1 -0.1 0
Q -0.2 0 0 -0.1 -0.1 0 0 0.3 0 0 0.2 -0.1 0 0 0 0 0.2 0 0 0
S 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
T 0.2 0 0 0 0 0 0 0 0.1 0 0 0.2 0 0 0 -0.1 -0.1 0 0 0
G -0.1 0 0 0 0 0 0 0 0 0 0.3 0 0 0 0 0 0 0 0 0
P -0.1 0 0 0 -0.1 0 0 -0.1 0 0 0.1 -0.1 0 0.2 0.2 -0.1 0 -0.1 0.3 0
C -0.1 0 0 0 0 0 0 -0.1 0 0.3 0 -0.1 0.3 0 -0.1 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0012 0 -0.2 0 0.2 0.3 0 -0.3 0.1 0 0.1 0.2 0.2 -0.3 0.2 -0.1 -0.3 0.1 0 0.1 0
0015 0.3 -0.4 -0.2 0 0.2 -0.3 -0.3 0.2 -0.3 0 0.4 0.6 -0.2 0 -0.1 0.2 0.1 0.2 -0.1 -0.3
Select residue pair below:
i_j Score Prob
0073_0087 2.407 1.00
0012_0015 2.085 1.00
0069_0095 1.952 1.00
0019_0158 1.940 1.00
0020_0158 1.842 0.99
0043_0087 1.835 0.99
0040_0048 1.667 0.98
0135_0147 1.640 0.98
0158_0162 1.619 0.98
0122_0125 1.602 0.98
0009_0012 1.599 0.98
0012_0020 1.588 0.98
0019_0038 1.572 0.98
0015_0020 1.569 0.98
0043_0073 1.537 0.97
0039_0067 1.493 0.96
0011_0158 1.475 0.96
0063_0104 1.465 0.96
0009_0013 1.394 0.94
0101_0108 1.376 0.94
0144_0148 1.370 0.93
0009_0016 1.342 0.92
0010_0013 1.325 0.92
0004_0009 1.311 0.91
0133_0153 1.305 0.91
0013_0020 1.301 0.91
0070_0111 1.298 0.91
0144_0147 1.291 0.90
0122_0135 1.284 0.90
0009_0014 1.256 0.89
0067_0071 1.254 0.89
0006_0132 1.250 0.88
0020_0028 1.243 0.88
0004_0012 1.238 0.88
0160_0164 1.231 0.87
0089_0141 1.225 0.87
0012_0035 1.169 0.83
0010_0015 1.168 0.83
0004_0152 1.163 0.83
0012_0016 1.151 0.82
0016_0019 1.143 0.82
0042_0065 1.127 0.80
0161_0164 1.121 0.80
0008_0014 1.119 0.80
0109_0122 1.118 0.80
0056_0094 1.116 0.79
0012_0158 1.114 0.79
0012_0038 1.114 0.79
0096_0104 1.111 0.79
0031_0038 1.106 0.79
0026_0124 1.102 0.78
0013_0016 1.099 0.78
0004_0010 1.099 0.78
0004_0013 1.097 0.78
0122_0147 1.096 0.78
0096_0128 1.084 0.77
0035_0165 1.070 0.75
0048_0096 1.070 0.75
0143_0147 1.067 0.75
0123_0134 1.066 0.75
0108_0140 1.061 0.74
0003_0010 1.059 0.74
0090_0132 1.055 0.74
0004_0015 1.049 0.73
0135_0144 1.042 0.72
0066_0069 1.042 0.72
0076_0086 1.035 0.72
0158_0165 1.030 0.71
0094_0105 1.026 0.71
0046_0070 1.026 0.71
0102_0133 1.025 0.71
0066_0071 1.020 0.70
0135_0148 1.020 0.70
0089_0120 1.016 0.70
0020_0067 1.016 0.70
0100_0107 1.013 0.69
0056_0154 1.013 0.69
0064_0088 1.008 0.69
0012_0152 1.002 0.68
0111_0143 0.999 0.68
0020_0151 0.988 0.67
0046_0066 0.982 0.66
0084_0147 0.979 0.66
0048_0089 0.979 0.66
0109_0125 0.977 0.65
0099_0102 0.976 0.65
0019_0029 0.975 0.65
0047_0143 0.974 0.65
0063_0110 0.974 0.65
0071_0147 0.973 0.65
0070_0143 0.972 0.65
0066_0103 0.971 0.65
0045_0048 0.971 0.65
0071_0084 0.968 0.64
0042_0087 0.965 0.64
0085_0122 0.963 0.64
0034_0158 0.962 0.64
0141_0156 0.961 0.63
0022_0140 0.959 0.63
0087_0119 0.956 0.63
0073_0119 0.950 0.62
0063_0132 0.949 0.62
0111_0136 0.949 0.62
0014_0020 0.948 0.62
0022_0155 0.948 0.62
0065_0109 0.941 0.61
0085_0135 0.938 0.61
0059_0063 0.934 0.60
0037_0121 0.931 0.60
0047_0065 0.929 0.60
0010_0028 0.925 0.59
0025_0049 0.923 0.59
0074_0090 0.922 0.59
0085_0129 0.920 0.58
0044_0068 0.919 0.58
0032_0038 0.913 0.58
0013_0158 0.913 0.58
0129_0135 0.912 0.57
0084_0135 0.909 0.57
0039_0044 0.909 0.57
0029_0152 0.909 0.57
0004_0035 0.908 0.57
0017_0064 0.907 0.57
0019_0028 0.907 0.57
0007_0013 0.907 0.57
0073_0125 0.906 0.57
0016_0020 0.903 0.56
0093_0129 0.901 0.56
0016_0028 0.900 0.56
0055_0135 0.900 0.56
0161_0166 0.898 0.56
0020_0029 0.894 0.55
0014_0158 0.892 0.55
0020_0035 0.891 0.55
0106_0139 0.890 0.55
0005_0035 0.885 0.54
0093_0154 0.884 0.54
0140_0157 0.882 0.54
0108_0148 0.882 0.54
0092_0121 0.880 0.53
0003_0028 0.879 0.53
0084_0148 0.878 0.53
0042_0089 0.877 0.53
0034_0038 0.875 0.53
0004_0028 0.875 0.53
0145_0150 0.875 0.53
0042_0090 0.874 0.53
0147_0165 0.874 0.53
0071_0088 0.873 0.53
0084_0144 0.871 0.52
0070_0109 0.870 0.52
0008_0016 0.869 0.52
0074_0132 0.868 0.52
0014_0101 0.868 0.52
0157_0160 0.864 0.51
0034_0037 0.864 0.51
0066_0109 0.861 0.51
0005_0012 0.861 0.51
0158_0161 0.855 0.50
0031_0037 0.853 0.50
0063_0088 0.852 0.50
0028_0031 0.851 0.50
0151_0158 0.851 0.50
0070_0144 0.850 0.50
0009_0035 0.850 0.50
0007_0017 0.848 0.49
0007_0015 0.844 0.49
0028_0048 0.843 0.49
0066_0166 0.842 0.49
0004_0008 0.841 0.48
0046_0144 0.839 0.48
0049_0146 0.836 0.48
0041_0087 0.834 0.48
0147_0160 0.834 0.48
0091_0113 0.834 0.48
0013_0035 0.832 0.47
0008_0015 0.832 0.47
0085_0148 0.830 0.47
0035_0164 0.826 0.47
0090_0093 0.825 0.46
0162_0165 0.820 0.46
0060_0108 0.820 0.46
0021_0143 0.819 0.46
0057_0146 0.817 0.45
0006_0067 0.814 0.45
0026_0097 0.814 0.45
0063_0067 0.813 0.45
0004_0020 0.812 0.45
0129_0148 0.812 0.45
0024_0049 0.812 0.45
0064_0071 0.811 0.45
0096_0102 0.809 0.44
0015_0158 0.807 0.44
0089_0096 0.807 0.44
0076_0085 0.805 0.44
0148_0164 0.805 0.44
0008_0018 0.805 0.44
0039_0059 0.803 0.44
0090_0101 0.802 0.43
0140_0144 0.801 0.43
0005_0009 0.800 0.43
0073_0122 0.799 0.43
0018_0109 0.799 0.43
0131_0145 0.798 0.43
0025_0069 0.797 0.43
0012_0034 0.797 0.43
0067_0104 0.796 0.43
0003_0012 0.796 0.43
0020_0152 0.796 0.43
0073_0147 0.794 0.42
0005_0017 0.793 0.42
0158_0166 0.792 0.42
0023_0089 0.791 0.42
0009_0020 0.789 0.42
0090_0120 0.789 0.42
0084_0129 0.788 0.42
0014_0034 0.788 0.42
0046_0135 0.786 0.41
0050_0060 0.785 0.41
0157_0161 0.783 0.41
0139_0166 0.782 0.41
0024_0101 0.781 0.41
0075_0089 0.778 0.40
0071_0111 0.778 0.40
0048_0104 0.777 0.40
0125_0135 0.776 0.40
0023_0033 0.775 0.40
0126_0136 0.775 0.40
0004_0014 0.775 0.40
0062_0084 0.773 0.40
0126_0154 0.772 0.40
0048_0066 0.772 0.40
0073_0109 0.771 0.40
0068_0107 0.771 0.40
0073_0111 0.770 0.39
0016_0158 0.770 0.39
Local Interactions:
i_j Score Prob
0041_0043 1.996 1.00
0019_0020 1.935 1.00
0017_0018 1.914 1.00
0014_0015 1.867 0.99
0011_0012 1.858 0.99
0013_0015 1.765 0.99
0013_0014 1.722 0.99
0010_0012 1.653 0.98
0015_0016 1.643 0.98
0034_0035 1.633 0.98
0155_0157 1.619 0.98
0009_0011 1.617 0.98
0012_0013 1.609 0.98
0147_0148 1.600 0.98
0007_0008 1.581 0.98
0036_0037 1.516 0.97
0084_0085 1.383 0.94
0123_0124 1.351 0.93
0014_0016 1.342 0.92
0113_0114 1.262 0.89
0012_0014 1.240 0.88
0029_0030 1.213 0.86
0160_0161 1.196 0.85
0021_0022 1.185 0.85
0071_0073 1.154 0.82
0118_0119 1.144 0.82
0164_0166 1.121 0.80
0033_0034 1.118 0.80
0016_0018 1.115 0.79
0010_0011 1.106 0.79
0106_0107 1.092 0.77
0165_0166 1.088 0.77
0025_0027 1.082 0.76
0041_0042 1.066 0.75
0141_0142 1.031 0.71
0159_0160 1.023 0.70
0003_0004 1.021 0.70
0006_0007 1.014 0.70
0011_0013 0.998 0.68
0035_0036 0.995 0.67
0070_0071 0.992 0.67
0161_0162 0.990 0.67
0154_0156 0.983 0.66
0006_0008 0.964 0.64
0163_0164 0.957 0.63
0066_0067 0.946 0.62
0162_0164 0.945 0.62
0049_0050 0.917 0.58
0098_0100 0.906 0.57
0091_0092 0.902 0.56
0016_0017 0.884 0.54
0129_0130 0.876 0.53
0017_0019 0.861 0.51
0074_0075 0.859 0.51
0023_0024 0.848 0.49
0030_0031 0.845 0.49
0015_0017 0.836 0.48
0111_0112 0.815 0.45
0062_0064 0.802 0.43
0129_0131 0.799 0.43
0068_0070 0.778 0.40
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: L G K E F ...

Page generated in 0.0155 seconds.