OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [V:0229] and [F:0230]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.1	0.6	0.5	0.4	0.7	0.2	0	0.8	-0.6	-0.6	-0.5	-0.9	-0.9	-0.2	-0.3	0.3	0.4	0.1	-0.4	0.3
F	0.2	0.1	-0.1	-0.2	0	-0.3	-0.1	-0.2	0.1	-0.1	-0.1	0.2	0.1	0.5	-0.1	0.5	0.4	-0.4	0.1	0.2
I	0.1	-0.1	-0.4	-0.6	-0.3	-0.7	-0.2	-0.6	0.5	-0.1	0	-0.2	0.4	0.3	-0.3	0.7	0.8	0.5	0.3	0
L	-0.2	0	0.1	0.1	0	-0.2	-0.2	-0.1	-0.1	-0.1	0.2	-0.1	0.5	0.6	-0.1	0.6	0.7	-0.3	0.2	0.2
V	0.2	-0.5	-0.4	-0.3	0	-0.3	-0.2	-0.8	0.3	-0.2	-0.1	-0.3	-0.1	0.4	0.1	0.7	0.6	0.4	0.5	-0.1
M	-0.2	-0.1	0.4	-0.1	-0.5	-0.1	0	0.1	0	0	0.2	-0.1	0	-0.1	0	0.7	0.9	-0.2	-0.2	-0.3
W	0.7	-0.2	-0.6	0.2	-0.4	0.9	0	-0.1	0	0.2	0	-0.1	0	0.2	-0.1	0.3	0	-0.2	-0.1	-0.2
Y	0.5	-0.1	0.2	0.2	0.2	0	-0.1	0.1	0.1	-0.1	-0.1	0	-0.1	-0.2	-0.1	0.1	0.1	0.4	-0.4	0.3
D	-0.3	0	0.1	-0.1	-0.2	0.2	0	0	0	0	0	0	0	0	0.2	-0.1	-0.2	-0.1	0	-0.1
E	0	-0.1	-0.2	0	-0.3	0	0	0	0	0	0	0.5	0	0	0.2	-0.2	-0.5	-0.1	0.4	-0.1
K	-0.1	0.2	-0.1	-0.1	-0.2	0	0	0	0	0	0.2	0	0	0	0	-0.5	-0.4	-0.1	0.2	0.2
R	-0.4	-0.1	-0.2	0.5	0.4	-0.1	0	-0.1	0	0.2	0	0	0.1	0.2	0	0	-0.5	-0.2	0.2	-0.2
H	0.1	-0.1	-0.2	-0.1	0.1	0	0	0	0	0.2	0	0	0.2	0.1	0.2	-0.7	-0.3	-0.1	0	-0.2
N	-0.2	0	-0.1	0.2	0	0	0	0	0	0	0	0	0	0	0	0	-0.3	-0.1	-0.1	-0.1
Q	-0.5	0	-0.1	-0.2	0.3	0	0	0.1	0	0	0	0	0	0	0	0	0.3	-0.1	0	-0.2
S	0.2	-0.3	0.1	-0.2	-0.1	-0.2	0.1	0	0	-0.1	-0.1	1.5	-0.2	-0.5	0.1	-0.8	-0.4	0.9	-0.2	0.5
T	-0.1	0.1	-0.1	0	-0.3	0	-0.1	0.2	-0.2	-0.1	-0.1	0.3	-0.1	-0.2	-0.2	-0.8	-0.5	0.7	1.1	0.2
G	-0.4	0.9	0.2	0.2	0.2	0.3	-0.1	1.4	-0.1	-0.1	-0.1	-0.1	0.2	-0.3	0.2	-0.6	-0.6	-0.3	-0.6	0.1
P	0	0	0.1	0.2	-0.2	0	0	0	0	0	0	0	0	0	0	-0.4	-0.2	-0.1	0	-0.1
C	0.3	-0.1	0.5	0.5	0.4	-0.1	0.2	-0.5	-0.1	-0.1	-0.1	0	-0.1	-0.2	-0.1	0.1	0.1	-0.8	-0.1	-0.4

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0229	0.6	0.6	1.2	1.6	1.5	0.1	0	-0.1	-1.2	-0.9	-1.1	-0.8	-1	-1.2	-1.3	0.6	1.1	0.1	-1.2	-0.1
0230	0.9	0.3	0.8	1.2	1	0	-0.9	-0.3	-0.5	-0.8	-0.8	0	-0.6	-0.4	-0.4	0	0.7	0	-0.5	0.1

Select residue pair below:

i_j	Score	Prob
0229_0263	1.863	1.00
0229_0271	1.817	1.00
0229_0239	1.561	1.00
0229_0261	1.272	0.99
0221_0229	0.807	0.76

Local Interactions:

i_j	Score	Prob
0229_0230	1.010	0.93
0228_0229	0.739	0.67

See all coupling residues
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