OPENSEQ.org -1516281329- GREMLIN Submission

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Coupling matrix for [A:0219] and [V:0262]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.6	-0.3	0.2	0.5	0.4	0.2	-0.5	-0.5	0.3	0.1	-0.2	-0.2	0.2	-0.4	-0.2	0.1	0.1	0.2	0.5	-0.3
F	0.2	0.3	0.1	0	-0.1	-0.2	-0.1	0	0.3	-0.5	0.3	0.3	-0.2	0.3	-0.5	0	0	-0.5	-0.1	0.2
I	0.2	0.4	0.3	0.1	0.4	-0.1	-0.1	0.1	0.3	0	-0.4	-0.8	0.1	0.4	-0.1	0	0.3	-0.2	-0.1	-0.4
L	0.6	-0.3	0.3	-0.2	0.2	0	0.3	0.8	0	-0.8	-0.3	-1	-0.6	0.5	0.2	0	0.7	0.6	-0.2	0
V	0.6	-0.3	0.3	0.3	0.8	0.1	-0.3	-1	0.4	-0.2	-0.4	-0.5	-0.1	0.2	-0.2	0.3	0.3	0.7	-0.3	-0.1
M	0.2	0.1	0.1	-0.4	0	0.2	0	0.2	-0.1	-0.2	-0.5	0.8	0.1	0	-0.3	-0.3	0.3	-0.4	0	-0.5
W	0.2	0	-0.1	-0.1	0.1	0	0	-0.1	-0.2	-0.1	-0.2	0.1	-0.1	0.2	-0.2	-0.2	-0.1	-0.1	0	0
Y	-0.7	0.1	0	-0.7	0.2	-0.1	0.2	0	-0.7	-0.2	-0.8	-0.2	0.1	0.1	1.1	0.4	0.8	0.1	-0.1	-0.1
D	-0.2	-0.7	0.2	0.3	-0.1	-0.2	-0.4	0.1	-0.8	-1	1.4	1.2	0.8	-0.2	0.4	0.2	-0.7	-0.5	-0.1	0.3
E	-0.2	-0.1	0	0.1	-0.4	-0.3	-0.1	-0.2	-1.2	-0.3	0.9	0.4	0.7	-0.3	-0.1	0.6	0.1	0.2	0	0.4
K	-0.1	0.9	-0.9	-0.2	-1.1	-0.6	0.3	0.1	1.7	1.3	-0.4	-1	-0.6	0	-0.3	-0.1	-0.2	0.8	-0.3	0.2
R	0.1	0	0.1	-0.1	-0.1	-0.6	-0.2	0	1.1	1.3	-0.4	0	-0.5	-0.1	-0.2	-0.4	-0.1	0.8	-0.3	0
H	-0.5	-0.2	-0.4	-0.1	0.1	0.2	0.2	0.3	-0.5	0.3	0.6	1.1	-0.5	-0.1	0.6	-0.1	0.1	-0.2	0.1	-0.5
N	-0.4	0.2	0.5	-0.1	-0.1	0.2	-0.1	0	-0.8	-0.5	0.1	-0.1	0	1.4	0.1	0	-1	-0.2	0.5	0.3
Q	0.1	0.1	-0.1	0	-0.4	-0.2	-0.3	-0.4	-0.2	0.2	0.2	0.3	0.2	-0.1	0.7	0.2	-0.2	0	-0.3	0.3
S	-0.3	0.1	-0.2	0.3	0	0.1	0.7	0.3	0.1	0.1	0	-0.2	0.7	-0.5	-0.2	0	-0.2	-0.4	-0.2	0
T	0	-0.1	0.3	0.2	0.3	0.4	0.1	0.6	0	0.3	0	-0.3	-0.2	-0.4	-0.2	0.1	0	-0.2	-0.1	0
G	0.1	-0.2	-1	0.7	-0.1	-0.1	-0.1	-0.5	0.2	0.5	0.5	0.1	0.2	-0.2	0	-0.4	0.1	-0.2	0.3	-0.3
P	0.2	0	-0.1	0.1	0.1	0	0	0	-0.2	-0.1	-0.2	0	-0.1	-0.1	-0.2	0	-0.2	-0.1	0	0
C	-0.3	0.1	0.7	-0.1	0.2	0.3	-0.3	-0.1	0	-0.1	0.1	0.1	0.2	-0.7	-0.1	-0.1	0	-0.1	-0.1	0.7

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0219	1	-0.4	0.4	0.1	1	-0.9	-1.6	-0.8	0.1	0.3	-0.1	0.2	0.2	-0.2	0.1	1.1	1.3	-0.3	-1.5	0.7
0262	0.7	-0.3	0	0.2	0.8	-0.7	-1.3	-0.5	0.3	0.2	0.1	0.2	0	-0.1	0.1	0.8	0.9	0	-1.1	0.6

Select residue pair below:

i_j	Score	Prob
0219_0262	1.874	1.00
0262_0304	1.599	1.00
0262_0303	1.230	0.98
0262_0305	0.784	0.73
0262_0272	0.685	0.58

Local Interactions:

i_j	Score	Prob
0261_0262	0.884	0.84
0260_0262	0.816	0.77
0262_0263	0.639	0.50

See all coupling residues
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