OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [L:0218] and [F:0230]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.2	0.1	0.4	0.6	0.5	0.3	-0.1	0.1	-0.3	0.3	-0.2	-0.5	-0.1	-0.6	-0.4	0.1	0.3	0	-0.5	0.2
F	0.1	0.2	0.4	0.3	0.2	0.1	-0.1	-0.6	0.3	-0.1	-0.1	0.9	-0.1	0.9	0.1	-0.5	0	-0.8	-0.6	0.1
I	0.3	0	0.4	0.4	0.3	0.1	0.1	-0.4	-0.1	-0.2	0.2	-0.7	0	0	-0.2	0.3	0.2	-0.2	0.1	0.4
L	0.5	0.1	0	-0.2	0.1	0	-0.1	0.2	0.3	-0.4	-0.6	0.3	-0.1	-0.1	0	0.2	-0.2	0.3	0.4	0.2
V	0.7	-0.3	0.1	0.1	0.2	0	0	-0.3	0	-0.3	0.3	0.3	-0.6	-0.2	-0.2	0.7	0	0.1	-0.7	0.6
M	-0.2	0.1	0.5	0.5	0.2	0.4	-0.2	0.4	-0.2	0.1	-0.2	-0.6	0.2	-0.1	0	-0.9	0.2	-0.1	0.4	0.7
W	-0.3	0	0.1	-0.1	0.3	0	0	0	0	0	0	0	0	0	0	-0.3	0.3	-0.1	-0.1	-0.1
Y	-0.1	-0.1	-0.1	-0.2	0.1	-0.1	0	-0.1	0	0	0	0	0	-0.1	0	-0.1	0.4	0	-0.1	-0.2
D	-0.2	0.2	0.1	-0.1	-0.3	0	0	0	0	0	0	0	0	0	0	0.2	-0.2	-0.1	0.2	-0.1
E	-0.4	-0.1	-0.2	0.1	-0.1	0	0	0	0	0	0	0	0	0	0	-0.5	0.8	-0.2	0	0.1
K	-0.2	0	-0.1	-0.1	-0.3	0	0	0	0	0	0	0	0	0	0.2	0	-0.4	0.2	0.2	0.1
R	0	-0.1	-0.1	0	-0.1	-0.1	0	0	0	0.2	0.2	0.2	0	0	0.2	-0.6	-0.2	0.4	-0.1	-0.2
H	0.3	-0.1	0	0.2	-0.7	-0.1	0	-0.1	0	0	0	0	0	0	0	0.1	0.2	-0.1	-0.1	-0.2
N	-0.6	-0.1	-0.2	-0.3	-0.5	-0.1	0	0	0	0	0	0.4	0	0	0.2	1	-0.3	0	-0.1	-0.2
Q	-0.1	0.2	-0.1	-0.2	0.1	-0.1	0	0	0.2	0	0	0	0	0	0.1	0	0.1	0.1	-0.1	-0.2
S	-0.2	0.1	0.2	0.1	0.3	0	0	0.3	0.1	0.2	0	-0.1	0.4	-0.2	-0.1	0.1	-0.1	0	-0.3	-0.8
T	0.1	-0.3	0.3	0.4	-0.1	-0.3	0	-0.4	-0.1	0	0	0.1	-0.1	0.1	0.1	0.4	0.1	1	-0.1	-0.7
G	0.2	0	0.1	-0.1	0	0	0	-0.2	-0.1	0	0	-0.1	-0.1	0.1	-0.1	0.4	0.1	-0.2	-0.1	0.2
P	0.3	-0.1	-0.3	0.1	-0.1	-0.1	0	1.4	-0.1	0	0	-0.1	0.2	-0.1	-0.1	-1.1	-1	0.1	0.9	-0.3
C	0.6	0.7	-0.5	-0.1	0.1	0.1	-0.1	-0.6	-0.2	-0.1	-0.1	-0.2	-0.1	0.1	-0.1	0.6	0.5	-0.3	-0.2	0.3

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0218	0.9	0.9	1.6	1.8	1.2	1.1	-1	-0.6	-0.8	-1.2	-1.1	-0.5	-1	-1.4	-0.6	0.6	0.2	0.5	-0.5	0.1
0230	0.9	0.3	0.8	1.2	1	0	-0.9	-0.3	-0.5	-0.8	-0.8	0	-0.6	-0.4	-0.4	0	0.7	0	-0.5	0.1

Select residue pair below:

i_j	Score	Prob
0211_0230	2.557	1.00
0192_0230	2.349	1.00
0230_0240	1.829	1.00
0230_0238	1.089	0.96
0186_0230	1.057	0.95
0218_0230	0.859	0.82
0215_0230	0.764	0.71

Local Interactions:

i_j	Score	Prob
0230_0232	1.553	1.00
0229_0230	1.010	0.93
0230_0231	0.553	0.36

See all coupling residues
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