OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [S:0209] and [A:0210]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.1	-0.4	-0.7	0	0.1	-0.5	-0.2	0.1	0.1	-0.3	0.4	0	1.9	0.1	0	-0.2	-0.1	-0.2	0.1	-0.2
F	-0.3	-0.4	0	-0.4	-0.2	0.2	-0.1	0.1	0.1	0.9	-0.2	0.7	-0.1	0.7	0.1	0	-0.1	-0.4	0	-0.3
I	0	0.1	0.2	-0.3	-0.3	0.2	-0.1	0	0.5	0.3	-0.2	0.1	0.1	-0.3	0.2	0	-0.1	0.2	-0.1	-0.3
L	0	-0.3	-0.5	0.7	0.3	-0.1	-0.2	-0.1	0.1	0.1	-0.1	0.3	0.1	-0.1	0.6	0.2	-0.5	-0.2	-0.1	0.1
V	-0.2	-0.4	0.3	0.3	0	0	0.1	-0.2	0.2	0.1	-0.6	-0.4	0.4	0.1	0	0.4	0.1	0.1	0	-0.2
M	-0.3	0	0.2	0	-0.2	-0.1	0.2	-0.2	0.5	-0.4	0.8	0.8	-0.3	-0.5	-0.1	-0.1	-0.1	-0.5	-0.3	0.2
W	-0.2	-0.1	0.1	-0.2	-0.2	-0.1	0	-0.1	-0.4	-0.5	0.4	1.8	-0.2	-0.1	0.2	-0.4	0.1	-0.7	-0.3	-0.1
Y	-0.4	-0.6	-0.4	-0.4	-0.6	0.3	-0.1	-0.3	0.3	0.3	-0.1	-0.1	-0.8	0.5	0.5	0.3	-0.1	0.5	0.3	-0.1
D	0.2	-0.1	0.7	0.1	0.2	-0.2	0	-0.7	-0.5	-0.1	0.3	-0.3	-0.3	0.2	-0.6	-0.2	0.3	-0.1	0.7	0.5
E	0	-0.1	0.2	0.3	-0.3	0.5	-0.1	-0.3	0.2	0	-0.1	-0.1	-0.2	-0.6	-0.1	-0.1	0.3	0.4	0.8	0.1
K	0.9	0.7	0.2	-0.1	0.1	-0.2	-0.3	0.4	0.1	0.1	0.1	-0.7	-0.8	-0.4	-0.2	0.2	-0.1	0.8	0	-0.5
R	0.3	1.7	0	-0.1	0	-0.3	0.2	-0.1	-0.3	0.1	-0.2	-0.8	0.2	0.3	-0.6	-0.2	0	0.9	-0.2	0
H	-0.1	-0.8	-0.1	-0.1	0.1	0.5	-0.2	0	0	0.6	0.7	0.4	-0.7	0.2	0.6	-0.1	0.4	-0.3	-0.1	-0.4
N	0.9	-0.7	0.1	0.1	0.6	-0.2	-0.2	-0.3	0.2	-0.1	0	-0.1	-0.2	0	-0.2	0.1	0.1	-0.3	0.1	0.6
Q	0.4	0	0.3	-0.2	0.3	-0.1	-0.2	-0.4	-0.1	0.1	-0.1	-0.7	-0.6	0.2	0.2	0.3	0.2	0.5	-0.2	0.3
S	-0.4	0.8	0.2	0	-0.1	0.7	0.1	0.6	-0.1	-0.4	0.2	-0.3	-0.8	-0.1	0.1	0	-0.1	-0.1	0.5	-0.5
T	0.2	0.1	-0.2	-0.4	0	0.1	0.2	-0.4	0.3	0.3	-0.4	-0.2	0.1	0.1	0.3	0	0.1	0.2	-0.4	0.3
G	-0.3	0.3	-0.8	0.4	0.4	-0.4	0.3	0.5	0.4	0.1	-0.1	0.4	0.4	-0.1	-0.2	0	0.2	-0.3	-0.7	-0.2
P	0.1	0.3	0.4	0.5	0	-0.3	-0.2	1	-0.6	-0.9	-0.6	-0.3	-0.1	0.2	-0.3	-0.4	0.1	-0.5	0.4	-0.2
C	-0.5	0.1	-0.2	0.2	0	-0.2	-0.1	-0.2	-0.5	0.1	-0.1	-0.4	1.1	0.1	-0.3	0.4	-0.3	0.5	-0.1	-0.2

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0209	0.5	-0.9	-0.6	-0.1	-0.2	-1	-2.3	-0.7	0.6	0.7	0.4	0.2	0.7	0.1	0	0.9	0.4	0.8	0.4	-1.2
0210	0.2	-0.4	-0.2	0.3	0.4	-1.2	-1.8	-0.9	0.7	0.5	0.3	0.2	-0.7	0.2	-0.1	0.8	0.6	0.5	0.8	-1

Select residue pair below:

i_j	Score	Prob
0210_0240	0.791	0.74
0210_0238	0.643	0.51
0206_0210	0.590	0.42

Local Interactions:

i_j	Score	Prob
0210_0211	1.546	1.00
0208_0210	0.923	0.88
0209_0210	0.820	0.78

See all coupling residues
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