OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [A:0174] and [W:0220]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.1	0.5	0.3	0.2	0.4	0.1	0.3	0.2	0.2	-0.3	-1.1	-0.2	0.3	-0.2	-0.3	-0.1	0.3	-0.3	-0.1	-0.1
F	0.6	-0.3	-0.4	-0.8	0.3	0.3	-1.1	-0.2	-0.2	-0.1	0.7	-0.2	0	0.2	-0.1	0.2	0.3	0.2	0.6	-0.1
I	0.2	-0.2	-0.2	0.3	-0.4	0.6	-0.5	-0.4	0.3	0.9	0.3	-0.1	0.2	0.6	0.3	-0.2	-0.6	-0.3	-0.4	-0.5
L	0.2	-0.2	-0.6	0.7	-0.6	0.2	-0.9	-0.5	-0.3	0.5	0.9	0.9	0	-0.3	0.8	0.1	-0.2	-0.3	0.8	-0.9
V	0.1	-0.2	0.2	0.5	0.1	0	-0.7	0.1	0	-0.5	0.5	0.5	-0.2	-0.3	0.4	-0.4	0	-0.1	-0.1	-0.4
M	0.6	-0.3	-0.5	-0.5	-0.1	0.2	-0.3	0.5	-0.1	0.1	0.5	-0.3	-0.1	0.4	-0.1	0.3	-0.1	-0.2	0	-0.3
W	0.1	-0.6	0.1	-0.5	-0.1	-0.1	-1.1	-0.5	0	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	2.2	0.1	0
Y	0.5	-0.7	0.1	-0.2	0.8	0.7	-1.2	-0.3	0.2	-0.1	-0.2	0	-0.2	-0.1	0.1	-0.3	-0.2	0.7	-0.1	0.5
D	-0.3	0.5	0.1	0.1	-0.5	0.2	0.6	0.3	0.1	-0.2	-0.1	0.6	-0.2	0.1	-0.2	0.2	-0.1	-0.3	-1.4	0.8
E	-0.2	0	0.6	0	0.1	-0.3	0.3	0.2	-0.3	-0.4	-0.2	1.5	-0.1	0.2	-0.1	0.2	-0.7	0.1	-0.8	0.4
K	-1.1	0.5	0.9	0.7	0.3	-0.4	1.1	-0.1	0.2	0.1	-0.5	-0.6	-0.3	-0.3	-0.2	-0.7	0.1	-0.2	0.1	0
R	0	0.2	0.7	0.4	0.5	-0.1	1.2	0	-0.3	-0.3	-0.4	-0.5	-0.1	0	-0.4	-0.3	0.1	-0.5	-0.1	-0.1
H	0.3	0.1	-0.6	-0.3	0.6	0	0.5	-0.4	-0.2	-0.2	-0.3	-0.4	-0.1	-0.2	-0.2	0.7	1	0	0.2	-0.3
N	-0.5	0.4	0	-0.6	-0.1	-0.4	0.6	0.1	-0.2	0.4	-0.2	0.5	-0.1	-0.1	-0.1	0.2	0	-0.2	0.8	-0.6
Q	-0.9	0.4	0.4	0.5	0.1	-0.1	0.8	0.4	-0.2	-0.1	-0.3	-0.1	0.1	0.1	0.7	-0.6	-0.5	-0.3	0	-0.7
S	0.1	0.3	-0.2	-0.1	-0.1	0.1	0.8	0.1	0.8	-0.2	-0.8	-1	0.4	-0.1	-0.2	0.4	0.1	0.3	-0.1	0.7
T	0.3	-0.3	0	0.2	0	0.1	-0.1	-0.3	-0.5	-0.1	0.7	0	0.3	0.1	0	0.3	0.3	-0.3	0	-0.1
G	-0.2	0.7	-0.1	0	0.3	-0.3	0.3	0.6	-0.1	0.2	0	-0.4	-0.4	-0.2	-0.1	0	-0.1	-0.4	0.1	0.4
P	-0.1	-0.3	0	0.1	0.1	-0.1	-0.4	0.2	0	0	0	0	0.1	0	0	-0.1	-0.1	0	-0.1	-0.1
C	0.5	-0.3	-0.1	-0.1	0	-0.4	-0.3	0.1	0.1	0.1	0.1	-0.5	0.3	-0.1	0.1	0.3	0.4	-0.1	0.5	0.3

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0174	1.2	-0.2	0.4	0.5	0.8	-0.5	-1.2	-0.4	0	0.3	-0.6	-0.3	-0.1	-0.5	-0.1	1.1	0.8	-0.2	-1.3	1.1
0220	0.7	0.7	0.4	0.8	0.9	0.2	-0.3	0.1	-0.6	-0.4	-0.6	-0.8	-0.1	-0.6	-0.2	0	0.3	-0.3	0	0

Select residue pair below:

i_j	Score	Prob
0132_0174	2.235	1.00
0174_0219	2.035	1.00
0174_0218	1.009	0.93
0174_0220	0.960	0.90
0174_0184	0.610	0.45

Local Interactions:

i_j	Score	Prob
0172_0174	1.086	0.96
0173_0174	0.754	0.69
0174_0175	0.646	0.52

See all coupling residues
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