OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [G:0143] and [S:0185]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.1	0.1	-0.1	0.2	0.2	-0.1	0.2	-0.1	0.1	0.2	0.6	-0.6	0	-0.2	-0.7	0.5	0.2	0	0	-0.1
F	-0.1	-0.1	-0.2	-0.3	-0.1	-0.1	0.2	-0.1	0	0.2	0	0	0	0	0	0.5	0.1	-0.2	0	-0.3
I	0	0.2	0.6	0.2	0.3	0.3	-0.1	-0.3	-0.1	-0.2	-0.1	0	-0.1	-0.1	0.1	-0.3	0.1	-0.2	-0.1	0.2
L	-0.3	-0.4	0.3	1	0.4	0.5	-0.1	0	0.1	-0.1	-0.1	-0.2	-0.1	-0.1	0	-0.3	-0.1	0.1	-0.1	-0.7
V	0.1	-0.4	0.4	0.6	0.8	0.3	-0.2	-0.4	-0.2	0.1	-0.1	0.1	0	-0.2	-0.4	-0.6	0.8	-0.1	-0.2	0.2
M	-0.6	0.1	0	0.1	0.6	-0.1	0	-0.1	0	0	0	0	0	0	0.2	-0.1	-0.3	0	0	0.1
W	0.3	-0.1	-0.1	-0.1	-0.6	0	0	0	0	0	0	0	0	0	0	0.1	-0.6	0.5	0	0
Y	-0.6	0.3	0.1	0.5	-0.6	0.5	0	0.1	0	0	0	0	0	0	-0.1	-0.2	0.1	-0.1	0	-0.2
D	-0.7	-0.1	0	-0.1	-0.3	-0.1	0	0	0.2	0	0	0	0	0	0	-0.2	0.1	-0.2	0.2	0.6
E	0	-0.1	0.9	-0.1	-0.2	-0.1	0	0.2	0.2	0	0	0	0	0	0	-0.7	-0.3	0	0	-0.1
K	-0.1	0.4	-0.1	0	-0.3	-0.1	0	0.2	0	0	0	0.2	0	0	0	-0.1	-0.2	-0.1	0	-0.1
R	0.1	0.1	-0.2	-0.1	-0.1	0.1	0	-0.1	0	0	0	0.2	0	0	0.2	-0.7	0.3	0.6	0	-0.1
H	-0.3	0.1	-0.2	-0.1	-0.3	-0.1	0	-0.1	0	0	0	0	0	0.2	0.2	0.4	-0.5	0.3	0	0
N	0.7	-0.2	-0.1	-0.3	-0.1	0.1	0.2	-0.1	0	0.7	0	0	0	0	-0.1	0.1	-0.5	-0.2	0	-0.1
Q	0	0.1	0.3	-0.2	0.4	0.1	0	-0.1	0	0	0	0	0	0	0	-0.4	-0.3	-0.2	0	0.1
S	0.3	0	0.1	-0.2	-0.1	-0.3	-0.1	0.1	-0.3	-0.1	-0.2	0.2	-0.1	0.4	-0.5	0.5	0.3	0.5	-0.1	0.3
T	0.1	-0.4	-0.3	0.1	0.1	-0.3	-0.2	0.2	-0.2	0	-0.1	0.2	-0.2	0.2	-0.3	0.6	0.6	-0.2	0.2	0.2
G	0.3	0.4	-0.2	-0.2	0.2	-0.4	-0.2	-0.1	-0.2	-0.3	-0.3	0.2	0.1	-0.3	0.9	0.6	0.2	-0.1	0.1	0.3
P	0.5	-0.2	-0.2	-0.3	0.4	-0.1	0	0.2	0	0	0	0.2	0	0	0	-0.4	0.2	-0.1	0	-0.4
C	0.4	0.2	-0.2	0.2	-0.1	0.2	0	0	0	-0.2	-0.1	-0.3	0.2	0	-0.3	0.2	-0.2	-0.3	-0.2	0.5

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0143	1.4	-0.6	0.6	1	0.6	-0.6	-1	-0.4	-0.8	-1	-0.8	-0.2	-0.6	-0.3	-0.8	1.2	1.2	0.7	-0.5	0.4
0185	0.9	0.1	1.4	1	1.2	0.3	-0.7	0.1	-0.8	-0.2	-0.9	-0.3	-0.6	-0.6	-1.1	-0.4	0.5	0.4	-0.6	0.4

Select residue pair below:

i_j	Score	Prob
0166_0185	2.987	1.00
0149_0185	2.659	1.00
0185_0195	1.954	1.00
0185_0193	1.041	0.94
0173_0185	0.970	0.91
0170_0185	0.821	0.78
0143_0185	0.791	0.74

Local Interactions:

i_j	Score	Prob
0185_0187	1.576	1.00
0184_0185	0.657	0.53
0185_0186	0.531	0.33

See all coupling residues
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