OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [V:0141] and [I:0149]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.5	0.5	0.5	0	0.9	0.2	0.6	-0.5	-0.1	-0.5	-0.9	-0.1	-0.3	-0.7	-0.6	0.1	0.6	-0.1	-0.6	0.2
F	0.1	-0.2	0.6	0	0.6	0.1	-0.2	0.2	-0.2	0	0	0	-0.1	0	-0.3	0.1	0.3	0	-0.3	0.5
I	1	-0.1	0.7	0.4	0.5	0.8	-0.6	-0.4	-0.2	-0.3	-0.2	0	-0.2	0.2	-0.5	0.2	0.3	0.5	0	0.1
L	0.7	-0.1	0.2	0.4	0.2	0.4	-1.4	-0.1	-0.3	0.4	0.3	-0.2	0.4	-0.2	0.4	0.2	0.4	0	0.5	-0.1
V	0.8	0.2	0.5	0.5	0.6	0.3	-0.1	0.5	-0.4	-0.2	-0.4	-0.4	-0.1	-0.6	0.2	0	-0.1	-0.1	0.3	-0.1
M	-0.1	-0.6	0.5	0.2	0.3	0.6	0.1	0	-0.1	-0.1	0.3	-0.1	-0.1	0.4	0.2	-0.3	0.1	-0.4	-0.2	0.2
W	0	-0.4	0	1.2	0.2	-0.3	-0.1	-0.1	0	0	0	0	0	0	0	-0.1	-0.2	-0.1	0	-0.4
Y	-0.8	1.6	0.3	0	0.2	0.2	0.3	0.1	0.8	0	0	0.1	-0.1	0.3	-0.2	-0.4	-0.7	-0.7	-0.1	0.5
D	-0.1	-0.1	-0.2	-0.1	-0.5	0.1	0	0	0	0	0	0	0	0	0	0.2	-0.1	0	0	-0.1
E	-0.1	-0.1	-0.2	-0.3	-0.5	0.1	0	0	0	0.2	0	0	0	0	0	0	0	0.5	0	0
K	-0.1	-0.1	-0.5	0	-0.4	-0.1	0	0	0	0	0	0	0	0	0	0.2	0	0	0	0.2
R	-0.1	-0.2	-0.7	0.7	-0.1	-0.2	-0.1	0	0	0	0	0	0	0	0	0.1	-0.1	0	0	-0.1
H	-0.2	0.8	-0.7	0	-0.8	-0.3	0.2	0.2	0	0	0	0	0	0.2	0	0.1	0.2	-0.1	0	-0.2
N	-0.1	-0.1	-0.2	-0.3	-0.2	0.2	0	0.2	0	0	0	0	0	0	0	0	0	0	0	-0.1
Q	0.1	0.2	-0.4	-0.3	-0.2	-0.1	0	0	0	0.1	0	0	0	0	0	0	0	0	0	-0.1
S	-0.4	-0.3	0.9	0.6	0.5	-0.2	-0.2	-0.1	0	-0.1	-0.1	0.4	0	-0.1	0	-0.3	-0.6	0.2	0.1	-0.4
T	-0.2	-0.5	0.4	0.1	0.1	-0.2	-0.1	0.1	-0.1	-0.1	0.6	-0.1	-0.1	0.1	-0.1	-0.3	-0.1	0.4	0.3	-0.1
G	0.2	0.3	-0.6	-0.8	0.1	-0.8	1.5	-0.1	0	0	-0.1	-0.1	-0.1	-0.1	-0.1	0.1	-0.1	-0.3	-0.1	0.4
P	-0.1	-0.1	-0.6	0	-0.3	-0.1	0	0	0	0	0	0	0	0	0	0.2	0.4	0	0	-0.1
C	-0.9	0.1	0.9	-0.2	0.2	0.3	-0.2	0	-0.1	-0.1	0	-0.1	-0.1	-0.1	-0.2	0	0.4	0	-0.2	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0141	0.1	1.2	2.1	2.3	2	1.1	-0.8	0.9	-1.1	-0.9	-1.1	-0.5	-0.5	-1.1	-1.2	-0.3	0.5	-0.8	-1	-0.8
0149	0.2	0.8	1.8	2.2	1.9	0.8	-0.1	-0.1	-1.3	-1	-0.8	-0.9	-1.2	-0.9	-0.8	-0.1	0.4	-0.4	-0.6	0

Select residue pair below:

i_j	Score	Prob
0149_0185	2.659	1.00
0149_0183	0.831	0.79
0149_0163	0.793	0.74
0149_0173	0.734	0.66
0141_0149	0.608	0.45
0143_0149	0.546	0.35

Local Interactions:

i_j

Score

Prob

See all coupling residues
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