OPENSEQ.org -1516281329- GREMLIN Submission

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Coupling matrix for [S:0135] and [K:0179]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.4	-0.2	-0.3	-0.3	-0.3	-0.5	0	-0.2	-0.1	0	-0.3	0.2	0.1	0.5	0.3	0.2	0.2	0.4	0.1	0.3
F	0.4	-0.3	-0.2	-0.1	-0.3	-0.2	0	-0.1	0.2	-0.2	-0.1	-0.4	0.1	0.3	0.3	0.3	-0.1	0	-0.3	0
I	-0.1	0.1	-0.1	-0.4	0.3	0	0	0.1	-0.2	-0.7	0.2	0.1	0.4	0.5	-0.2	0.2	-0.3	-0.3	-0.3	-0.1
L	0.3	-0.3	-0.5	-0.3	-0.2	-0.3	-0.1	-0.1	-0.4	-0.4	0.4	0.4	-0.2	0.2	-0.2	0.4	0.1	0.2	0.1	0.4
V	-0.3	0.1	-0.1	0	-0.2	-0.1	-0.1	0.1	-0.3	0	-0.3	0.6	-0.4	0.1	0.4	-0.3	0.2	0.1	0.5	0.1
M	-0.5	-0.1	-0.1	-0.1	-0.1	-0.1	0	0.1	-0.1	-0.2	0.7	0	-0.3	0	-0.2	0.3	0.2	-0.2	-0.2	0.2
W	0	-0.2	1.1	0.5	0.9	-0.2	0.1	-0.1	-0.9	-0.2	0.5	0.6	-0.1	-0.7	-0.1	-0.7	-0.1	-0.6	-0.3	0
Y	0.1	0.1	0	0	0.5	-0.2	-0.1	-0.1	0.6	0.3	0.2	-0.6	0	0.4	-0.1	0.3	-0.4	-0.9	-0.1	-0.2
D	0.3	0.6	-0.3	0.3	0	-0.3	-0.2	0.5	-0.3	0	-0.2	0.4	0.4	-0.1	-0.5	-0.1	-0.1	0.3	0.1	-0.6
E	-0.2	1	0.3	0.2	-0.5	0	-0.1	-0.1	0.3	0.3	0.3	0.1	-0.6	-0.3	0.1	0.1	-0.4	0.2	0	-0.4
K	-0.5	-0.6	0.8	0.2	-0.1	1.1	-0.2	0.2	0	-0.1	-0.3	-0.3	0.5	-0.1	0.5	-0.5	-0.3	0	-0.2	-0.2
R	0.7	-0.1	0.3	0	-0.2	0	0	-0.7	0.5	0.1	0	0	0.3	0	0	-0.2	-0.2	-0.1	-0.1	-0.6
H	-0.7	-0.4	0	0	-0.3	0.8	0.1	-0.2	1.2	0	-0.1	0.3	0.2	0.3	-0.7	0.1	0.6	-0.3	0.4	-0.8
N	0	-0.1	-0.2	-0.4	0.2	-0.1	-0.2	-0.4	1.1	-0.1	-0.3	0	0.2	-0.1	0.2	0.1	0.4	0	0.2	-0.3
Q	-0.1	-0.1	0.1	0.1	-0.2	0	-0.2	0	0.3	0.5	-0.1	-0.4	0	0.3	0.1	-0.4	-0.1	0.1	0.3	0.2
S	0	0.1	-0.3	0.4	0	-0.2	-0.1	-0.1	0.1	0.1	0.1	-0.3	0.1	0.2	0.4	-0.1	0.1	0.1	0	0.2
T	0	0.3	-0.1	-0.4	-0.1	-0.5	-0.1	0.5	-0.1	-0.1	0.3	-0.5	-0.1	-0.2	0.1	-0.1	0.1	-0.1	0.5	0.6
G	0.1	0.6	-0.3	-0.2	0.1	0.3	-0.2	-0.3	0	0.2	-0.3	0.1	-0.6	-0.5	0	0.3	-0.1	0.5	0	-0.1
P	0.4	-0.2	-0.2	0	0.6	-0.2	-0.3	0.2	-0.5	0.3	-0.2	-0.2	-0.3	0.2	-0.1	0.5	-0.4	1	0	0.4
C	-0.1	-0.4	0	-0.1	-0.1	0.3	-0.1	0	0.2	0.6	-0.3	0	0	-0.1	0.3	0.1	0.1	-0.1	-0.3	-0.4

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0135	0.7	-1.2	-1	-0.2	-0.3	-1.3	-1.3	-1	0.5	0.3	0.7	0.4	0.1	0.3	0.3	1.1	0.2	0.3	1.7	-0.8
0179	0.1	-0.6	-0.8	-0.2	-0.6	-1.1	-2	-1	1.4	1	0.2	0	0.1	0.9	0.4	0.9	0.2	1.1	0	-1.4

Select residue pair below:

i_j	Score	Prob
0135_0179	1.285	0.99
0176_0179	0.836	0.80

Local Interactions:

i_j	Score	Prob
0178_0179	1.018	0.93
0179_0180	0.787	0.74
0179_0181	0.555	0.36

See all coupling residues
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