OPENSEQ.org -1516281329- GREMLIN Submission

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mep50

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Coupling matrix for [V:0128] and [S:0142]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.2	-0.1	0.8	0	0.8	0.2	-0.1	0.1	-0.1	0	0	-0.3	0.1	-0.2	-0.2	-0.1	-0.8	-0.2	-0.1	0.5
F	0.1	0.2	-0.5	0.2	-0.6	-0.3	-0.1	1.1	0.2	-0.2	-0.1	-0.2	0.2	-0.1	-0.1	0.1	0.4	0	-0.2	-0.1
I	0.1	0.5	0.2	0.4	0.1	-0.1	0.5	0.4	-0.3	-0.3	-0.5	-0.4	-0.3	-0.5	-0.1	0.5	0.5	0.2	-0.2	0.1
L	0.2	0.9	-0.3	-0.4	-0.3	-0.1	-0.1	-0.7	0.1	0.2	0.3	0.4	-0.3	-0.2	-0.2	-0.1	0.4	0.1	0.3	0.6
V	0.3	0.3	0.1	0.1	0.2	-0.3	0.2	0.2	-0.1	-0.1	-0.5	-0.4	0.1	-0.5	-0.1	0.9	0.3	0	0	0.2
M	0.2	-0.7	0.2	0.5	0	-0.2	0	-0.4	0	-0.1	0.2	0.4	-0.1	-0.1	-0.1	-0.2	0.6	0	0.1	0.1
W	0.1	0.2	-0.4	0.3	-0.5	0.7	0	-0.1	0	0	0	0	0	0	0	-0.5	0.1	-0.2	0	-0.3
Y	0.4	0	-0.2	0.6	-0.1	-0.2	-0.1	0.5	0	-0.1	0.1	-0.1	-0.2	-0.1	0	-0.6	0.2	-0.4	-0.1	0
D	0	0.2	-0.1	-0.2	0.1	-0.1	0	0.1	0	0	0	0.5	0	0	0	-0.3	-0.4	0.3	0	-0.3
E	-0.4	-0.2	-0.4	-0.2	-0.6	0.4	0	0.1	0	0.5	0	0	0.2	0	0.2	0.1	0	0.1	0	0
K	-0.3	-0.2	0	0	-0.4	0.4	0	-0.1	0	0	0	0.2	0	0	0	-0.4	0.5	0.3	0	-0.3
R	-0.5	0.5	0.8	-0.2	0	-0.2	0	-0.2	0	-0.1	0.2	0.2	0	0.2	0	-0.4	-0.5	0.4	-0.1	-0.2
H	0	-0.2	-0.2	-0.1	0.1	-0.1	0.2	0.2	0	0	0	0	0	0	0	0.3	-0.5	-0.1	0	-0.1
N	0	0.2	0	-0.3	0.5	0.1	-0.1	0.2	0	-0.1	0	-0.1	-0.1	-0.1	0	-0.3	0	0.3	-0.1	-0.3
Q	-0.3	0.1	-0.2	-0.3	0.1	-0.1	0	-0.2	0	0	0	0	0	0.2	0.2	0.6	0.2	0	0	-0.3
S	0.1	-0.1	0.4	0.2	0.6	0.1	-0.1	-0.2	-0.1	-0.1	0	-0.1	0.1	-0.1	-0.1	0	-0.2	-0.1	-0.1	-0.4
T	0.3	-0.4	0.3	0.2	0	0	-0.1	-0.2	-0.1	-0.1	-0.1	0	-0.1	-0.1	-0.1	0.5	0.3	-0.1	-0.1	0.3
G	-0.2	-0.5	0.4	-0.4	0.6	-0.2	-0.2	0.1	0.2	0.3	0.1	-0.1	0.5	-0.2	0.1	-0.2	-0.1	-0.1	0.7	-0.3
P	0.3	-0.3	0.2	-0.4	0.5	0.1	0	-0.8	0.1	-0.2	-0.3	0.1	-0.2	1.1	0.1	0	-0.4	-0.3	-0.3	0.9
C	0.5	0	-0.2	-0.1	0.1	0.4	-0.1	-0.2	-0.1	-0.2	0	-0.3	0.1	-0.1	-0.1	0.2	0.1	0	-0.1	0.3

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0128	0.7	0.5	1	1	1.1	0.1	-1	-0.2	-0.7	-0.7	-0.8	-0.1	-1	-0.3	-0.6	0.4	0.5	-0.3	0.1	-0.3
0142	0.7	0.5	1.4	1.2	1.7	0.3	-0.8	0.4	-0.9	-0.5	-0.6	-0.6	-0.4	-1	-0.8	-0.6	0.5	-0.4	-0.5	0.6

Select residue pair below:

i_j	Score	Prob
0124_0142	2.853	1.00
0103_0142	2.290	1.00
0142_0152	2.211	1.00
0131_0142	1.205	0.98
0142_0150	1.060	0.95
0097_0142	0.825	0.78
0128_0142	0.768	0.71
0142_0146	0.657	0.53

Local Interactions:

i_j	Score	Prob
0142_0144	1.610	1.00
0142_0143	0.579	0.40

See all coupling residues
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