May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

mep50 Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [A:0033] and [L:0086]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 -0.2 0.2 0.5 0.2 0.1 0.2 -0.4 -0.1 -0.2 -0.3 -0.3 -0.4 0.7 0.1 -0.3 0 -0.2 0.3 0.3
F 0.6 -0.8 -0.1 -0.2 0 0.2 0.1 -0.1 0 -0.1 0.2 0.1 -0.1 0.2 -0.1 -0.4 -0.3 1.2 -0.1 0
I -0.2 0.2 -0.1 0.6 -0.5 0.3 -0.1 -0.3 0 0 0 -0.1 -0.1 0 -0.1 -0.1 0.6 0.2 -0.1 -0.3
L 0.3 0.1 -0.1 0.4 0.1 0.5 -0.2 -0.2 0 -0.1 -0.1 0.1 0.2 -0.1 -0.1 0.1 -0.3 -0.3 -0.2 -0.5
V 0.6 -0.4 0.5 0.8 -0.4 0.8 -0.1 -0.5 -0.1 -0.1 -0.1 -0.2 -0.1 -0.1 -0.1 0.2 0.1 0 -0.2 -1
M 0.2 -0.3 0.6 -0.1 -0.1 -0.1 -0.1 0.1 0 0 0 0 0 0 0 -0.2 -0.3 -0.1 -0.1 0.1
W -0.3 0.3 -0.5 -1 0.1 -0.2 0.2 -0.1 0 0 0.5 0 0 0 0 -0.2 -0.3 0 -0.1 0.9
Y -0.1 -0.1 0.1 0.1 0.2 -0.4 -0.1 -0.1 0 0 0.2 -0.1 0 -0.1 -0.1 0.1 -0.2 0.5 -0.1 0.4
D -0.1 -0.6 0.1 0.4 0.5 -0.3 -0.4 -0.2 0.1 0 -0.1 -0.4 0 -0.3 -0.1 -0.1 0.5 0.8 0 0.5
E -0.5 0.4 -0.1 -0.2 -0.5 0.4 -0.1 0 0 0 0 0.1 0.2 0.2 -0.1 -0.1 -0.3 -0.3 0.3 0.3
K -0.6 0.8 0.2 0 -0.4 -0.1 -0.2 1 0 -0.1 -0.1 -0.2 -0.1 -0.1 -0.1 -0.2 -0.2 -0.4 -0.1 -0.1
R -0.2 0.6 0 0 -0.2 0.1 -0.3 0.9 0.2 0.1 0.1 -0.3 -0.1 -0.1 -0.2 -0.4 -0.2 -0.1 0.2 0.2
H 0.4 0 -0.5 0.1 0.2 0 -0.2 -0.1 -0.1 -0.1 -0.1 0 -0.1 0.1 -0.1 0.8 0.3 -0.3 0.2 -0.1
N 0.1 0.3 0.3 -0.2 0.2 0.1 -0.1 0.3 -0.1 0.1 -0.1 -0.2 -0.1 -0.1 0.1 0.1 0.2 -0.5 -0.2 0.1
Q -0.5 1.1 0.4 -0.2 0.2 -0.2 -0.2 0.1 -0.1 -0.1 -0.1 -0.2 0.6 -0.1 -0.1 0.3 -0.5 0.1 -0.2 -0.2
S 0.4 -0.9 -0.1 -0.3 0.3 -0.2 1 -0.7 -0.2 -0.1 -0.5 0.5 0.2 -0.1 1.3 0.5 0.1 -0.3 0.1 -0.1
T 0.6 0 -0.4 -0.1 -0.3 -0.1 -0.4 -0.3 0.1 0.2 -0.1 0.6 0 0.1 -0.2 1.1 0.4 0.1 -0.2 -0.4
G -0.2 0.5 0.1 -0.3 0.3 -0.1 -0.1 1 -0.2 -0.2 -0.2 -0.2 -0.3 -0.3 -0.3 -0.6 0.5 0.5 0.1 0.2
P 0.1 0.7 0.3 0.2 0.1 -0.4 0.3 0.1 0 0 -0.1 -0.1 0.2 0 -0.1 -0.1 -0.4 -0.2 -0.1 -0.6
C -0.2 -0.6 0.3 0.4 0.2 0.7 -0.1 -0.6 0 -0.1 0.3 0.2 -0.4 -0.3 -0.4 0.4 0.1 0 0 0.4

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0033 0.7 0.4 -0.4 -0.1 -0.2 -0.7 -1 -0.1 -0.1 -0.1 -0.5 0.2 0.2 0 -0.1 1.1 0.6 0.9 -0.4 0.3
0086 1.2 1 1.9 1.9 1.5 1 -1.4 -0.8 -1.1 -1 -1 -0.8 -0.9 -0.8 -1 0.7 0.1 0.1 -0.5 0.5
Select residue pair below:
i_j Score Prob
0033_0046 2.273 1.00
0033_0086 1.003 0.93
0033_0085 0.852 0.81
Local Interactions:
i_j Score Prob
0033_0035 0.882 0.84
0031_0033 0.821 0.78
0033_0034 0.787 0.74
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M R K E T ...

Page generated in 0.0184 seconds.