May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ccr6 Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [R:0286] and [C:0288]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.4 0.3 -0.2 -0.4 -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.2 -0.2 0.5 -0.2 0.4 0.4 0.1 0.5 -0.3
F 0.2 0 0.2 0.1 0 -0.2 0.9 0.2 -0.2 0.1 0.3 -0.1 0.1 0 -0.4 -0.4 0.1 -0.3 -0.2 0.1
I 0.5 0.1 0.1 -0.6 -0.2 0.5 -0.2 -0.3 0.3 -0.1 -0.3 -0.5 -0.4 0.2 0.5 0.8 0.3 -0.4 0.3 -0.9
L -0.1 0.2 0.1 0.6 -0.3 0.5 -0.3 0.5 -0.3 0.1 0.1 0.1 -0.3 -0.2 0.2 -0.2 0 -0.5 0.3 -0.7
V 0.3 0 0 -0.2 0.1 -0.2 -0.1 -0.2 -0.3 0.6 -0.1 0.7 0.3 0.1 -0.2 0.2 -0.1 0.2 -0.5 -0.6
M 0.2 -0.3 0.2 0.5 -0.2 -0.1 -0.1 -0.1 0 -0.3 0.1 -0.2 0.3 -0.2 -0.2 -0.4 -0.3 0.4 0.6 -0.2
W -0.2 -0.2 -0.1 -0.1 -0.1 -0.1 0 -0.1 -0.2 -0.3 0.3 0.3 -0.1 0.3 -0.1 0.4 0.3 -0.2 -0.2 -0.2
Y -0.3 0.1 0.8 -0.3 -0.1 -0.1 -0.1 -0.1 0 0.2 0.5 -0.2 -0.2 0.1 0.6 -0.4 -0.3 -0.3 0.3 0.1
D 0.1 -0.1 -0.3 0 0.2 0.3 -0.1 -0.2 0 -0.3 1.1 -0.3 -0.2 -0.3 -0.3 0.3 -0.2 -0.1 0 0.2
E -0.3 0.2 -0.3 0.6 -0.2 -0.2 -0.1 0.2 0.9 -0.2 -0.3 0.1 0.2 -0.1 0.1 0.4 0.1 0.9 -0.4 -0.3
K 0.3 -0.3 -0.2 0 -0.2 -0.1 -0.1 -0.1 1.1 -0.1 -0.3 -0.2 -0.1 0.5 0.5 0 -0.2 -0.1 -0.3 0.4
R -0.2 -0.3 0.3 0.2 -0.1 -0.1 0 -0.1 -0.2 0.1 0.1 -0.2 -0.1 -0.2 -0.2 0.1 -0.2 -0.2 -0.2 0.8
H 0.2 0.2 0.3 -0.2 -0.1 -0.1 0 -0.1 -0.3 0 -0.1 0.3 -0.1 0.3 -0.1 0.1 -0.2 -0.2 -0.2 0.6
N -0.2 0 -0.2 -0.3 0.6 -0.1 -0.1 -0.1 -0.4 0.1 -0.3 -0.2 -0.2 -0.3 0.5 0.2 0.4 0.3 -0.3 0.1
Q 0.6 0 -0.2 0 -0.2 -0.1 -0.1 -0.1 -0.3 1 -0.3 -0.3 -0.2 -0.3 0.1 -0.2 0.4 0 0 0.2
S -0.5 -0.5 -0.3 0.2 -0.3 0.7 -0.1 0.6 0.2 -0.4 -0.3 -0.3 0.5 0 0 0 -0.1 0.4 0.5 0.4
T 0.5 -0.3 -0.2 -0.3 0.7 -0.1 0.2 0 0 0 -0.3 0.2 -0.1 -0.2 -0.2 -0.3 -0.3 0.4 0.1 0.9
G -0.3 -0.2 -0.2 -0.2 -0.1 -0.1 -0.1 -0.1 0.1 0.1 0.3 0.3 0.3 0.2 -0.2 0.1 0.2 -0.3 -0.2 0.5
P -0.3 1.3 0.3 0.5 -0.1 -0.1 -0.1 -0.1 0.2 -0.1 -0.2 0 -0.1 -0.2 -0.2 -0.4 -0.2 -0.3 -0.2 0.6
C -0.1 -0.1 0 -0.1 0 0 0 0 -0.1 -0.1 -0.1 -0.1 0 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.5

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0286 0.2 1 0.5 1 0.2 -0.1 -0.7 0 0.2 0.3 -0.1 -0.5 -0.4 -0.2 -0.1 0.5 -0.1 -0.6 -0.2 -1.6
0288 0.4 0.2 -0.2 0.3 -0.6 -0.7 -1 -0.7 0.5 0.5 -0.1 -0.3 -0.5 -0.4 0 0.5 0.2 -0.2 0.1 1.9
Select residue pair below:
i_j Score Prob
0036_0288 1.613 1.00
Local Interactions:
i_j Score Prob
0287_0288 1.059 0.93
0286_0288 0.781 0.68
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M S G E S ...

Page generated in 0.0215 seconds.