May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
ccr6 Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [L:0038] and [Q:0039]
- A F I L V M W Y D E K R H N Q S T G P C
A 0.1 -0.1 0.3 0.8 0.2 -0.1 -0.2 -0.3 -0.3 0.1 -0.5 0.1 0 -0.2 0.5 -0.4 0.3 -0.4 0.2 0.4
F 0.4 0 -0.2 -0.1 0 -0.1 -0.1 0.4 -0.4 0.2 -0.2 -0.1 0.8 0.3 -0.2 0.8 -0.4 -0.4 -0.2 -0.1
I -0.3 -0.1 -0.2 -0.1 -0.5 -0.1 -0.1 -0.1 0.3 0.1 0.6 -0.1 0.1 -0.2 0.2 -0.4 -0.3 0.1 0.6 -0.1
L 0 -0.4 -0.1 0.1 -0.2 0.6 0.1 1 -0.3 0.3 -0.2 -0.2 -0.5 0.4 0.7 -0.1 -0.3 0 0.2 -0.2
V 0.3 0.4 0.7 -0.2 -0.6 -0.1 -0.2 -0.2 0.8 -0.4 0.5 -0.1 0.1 -0.4 -0.1 -0.6 0.1 -0.5 0.6 -0.2
M -0.2 -0.2 0.3 -0.1 0.3 0 -0.1 -0.2 0 -0.1 -0.2 0 -0.1 0.6 -0.1 0.1 -0.1 -0.2 -0.2 0
W 0 0 0 0 -0.1 0 0 0 -0.1 0.3 0 0 0 0 0 -0.1 -0.1 -0.1 0 0
Y -0.3 0 0.1 -0.1 0.3 -0.1 -0.1 -0.2 -0.1 0.5 -0.2 -0.1 -0.1 -0.2 -0.1 0.9 0.2 -0.2 -0.2 -0.1
D 0.2 0.2 -0.2 -0.2 -0.1 -0.1 0.3 -0.1 -0.4 0.2 -0.2 -0.1 0.3 -0.2 -0.2 0.3 0 0.4 -0.2 -0.1
E 0.5 -0.2 0 0 0 -0.1 -0.1 -0.1 0.2 0.1 -0.2 0.4 -0.2 0.1 -0.1 -0.3 0.1 0 0 -0.1
K -0.2 -0.1 -0.1 0.3 0.1 -0.1 0.3 -0.2 0.4 0.5 0.4 -0.1 -0.3 0.3 0.1 -0.6 0 0.1 -0.4 -0.1
R -0.3 -0.2 -0.2 -0.1 -0.5 -0.1 -0.1 -0.1 1.3 -0.2 0.6 0.4 -0.2 0 -0.1 0.1 0.1 0 -0.1 -0.1
H -0.3 -0.2 -0.2 -0.2 -0.1 -0.1 0 0.2 0.1 0.1 0.2 -0.1 0.4 0 -0.2 -0.1 0 0.3 0.1 -0.1
N 0.1 0.7 -0.2 -0.2 0 -0.1 0.7 -0.1 -0.3 -0.1 0 -0.1 -0.3 -0.4 -0.1 0.3 -0.2 0.2 0 0.1
Q -0.2 -0.1 0.1 -0.1 0.5 -0.1 -0.1 0.1 0.6 0.1 -0.1 0 -0.1 -0.2 -0.1 -0.2 0.1 -0.3 -0.1 -0.1
S -0.1 -0.2 0.7 0.1 0.3 -0.1 -0.1 -0.2 -0.3 0.1 -0.4 -0.1 0.1 -0.4 -0.3 0.5 0.4 -0.2 -0.3 0.4
T 0.7 0 0.1 -0.1 0.1 -0.1 -0.2 -0.2 -0.5 -0.5 -0.3 -0.1 0.4 -0.4 -0.3 0.5 0.4 0.2 -0.3 0.6
G 0 0.2 -0.2 0.1 0.2 -0.1 -0.1 -0.1 -0.3 -0.3 -0.2 -0.1 -0.2 -0.1 -0.1 0.1 -0.2 0.8 0.6 -0.1
P -0.2 0.2 -0.3 0 1 -0.1 -0.2 -0.2 0.1 0.4 0.3 -0.1 -0.3 -0.1 0.1 -0.1 0.1 0 -0.3 -0.2
C 0 0 0 0 -0.1 0 0 0 -0.1 -0.1 0 0 0 -0.1 0.4 -0.1 -0.1 -0.1 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0038 0.7 0.1 0.1 1 0.2 -0.3 -1.1 -0.3 0.2 -0.2 0.1 -0.3 -0.1 0.1 -0.6 0.3 0.4 -0.1 0.3 -1.2
0039 0.1 -0.2 -0.2 -0.5 0.6 -1.1 -0.9 -0.8 1 1.2 0.1 -0.9 -0.1 0.1 -0.1 0.4 0.3 0.5 0.2 -0.5
Select residue pair below:
i_j Score Prob
0035_0039 0.800 0.71
0031_0039 0.797 0.70
Local Interactions:
i_j Score Prob
0039_0040 1.386 0.99
0037_0039 0.937 0.86
0038_0039 0.889 0.81
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: M S G E S ...
Page generated in 0.0143 seconds.