May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
GREMLIN_4ote Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [D:0217] and [V:0218]
- A F I L V M W Y D E K R H N Q S T G P C
A 1.1 -0.3 -0.4 -0.1 0.2 0.1 -0.1 -0.3 -0.5 0.4 0.3 -0.2 -0.2 -0.1 -0.1 0.3 0 0.9 -0.1 -0.3
F -0.2 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
I -0.3 0 -0.1 -0.2 -0.2 0 0 0.7 0 0 0 0 0 0 0 -0.1 0 0 0 0
L -0.4 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0.4 0 0 0 0
V -0.4 0 -0.2 0.5 -0.3 0 0 -0.1 -0.1 0 0 0 0 0 0 0.5 -0.1 0 0 0.2
M -0.2 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
W -0.3 0.4 -0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
Y -0.2 0 -0.1 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
D 0.3 -0.2 0.5 0.3 0.5 0.3 -0.1 -0.1 0.1 -0.4 -0.2 -0.2 -0.2 -0.1 -0.1 -0.2 0.7 -0.1 -0.1 -0.2
E 0 0.1 0.8 0.5 0.8 -0.3 -0.2 -0.3 -0.6 -0.3 0.4 0 0.3 -0.2 -0.2 0.2 0.1 -0.1 -0.1 0.5
K 0.8 -0.4 -0.3 0.1 0.2 -0.2 0.1 0.3 1 0.3 -0.5 0.1 0.3 0.1 -0.2 0 -0.3 -0.6 -0.1 0.2
R 0.3 0.2 0.4 0.2 -0.4 0 0 0 0.2 -0.1 -0.1 -0.1 -0.1 0 0 -0.1 -0.2 0.5 0 -0.1
H 0.4 0 0.2 -0.2 -0.2 0 0 -0.1 0 0 0 0 0 0 0 -0.2 0 0 0 0
N 0.7 -0.1 -0.3 0 0 0 0 0.7 -0.1 0.3 0 -0.1 -0.1 0 0 -0.4 -0.1 -0.1 0 -0.1
Q 0.4 0.1 0.1 0.1 0.5 -0.1 -0.1 -0.4 0.1 -0.2 -0.1 -0.1 -0.1 -0.1 0 0.5 0.4 -0.2 0 -0.2
S 0 0 0.2 0.3 0.6 -0.1 0 0.2 -0.2 -0.2 -0.1 -0.1 -0.1 0 0 0 -0.2 -0.1 0 0.2
T 0 -0.1 0.4 0.5 0.1 0 0 -0.2 -0.1 -0.1 0 -0.1 0 0 0.2 -0.3 0.1 -0.1 0 -0.1
G -0.2 0.3 0.2 0.2 -0.1 0 0 -0.1 0 0 0 0 0 0 0 -0.2 -0.1 0 0 0
P -0.3 0 0.1 -0.2 -0.2 0 0 0 0 0.5 0 0 0 0 0 -0.1 0 0 0 0
C -0.1 0 -0.1 -0.2 -0.1 0 0 0 0 0 0 0 0 0 0 0.4 0 0 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0217 1.1 -1.1 -0.8 -0.9 -0.3 -1.1 -0.9 -1.1 1.1 1.8 1.3 0.8 -0.5 0.3 1.3 0.5 0.2 -0.3 -0.8 -0.7
0218 1.7 -0.1 1 1.6 1.4 -0.8 -0.8 0.4 -0.4 -0.1 -0.7 -0.6 -0.5 -0.9 -0.9 0.9 0.2 -0.1 -1 -0.1
Select residue pair below:
i_j Score Prob
0025_0218 1.199 0.98
0029_0218 1.003 0.93
0214_0218 0.986 0.92
0022_0218 0.828 0.79
0021_0218 0.675 0.56
Local Interactions:
i_j Score Prob
0217_0218 0.901 0.86
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...
Page generated in 0.0204 seconds.