May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
GREMLIN_4ote Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix.
Coupling matrix for [K:0101] and [D:0103]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.3 -0.1 -0.1 -0.3 0.1 -0.2 0 -0.1 0.1 0.2 -0.1 0 0.3 0 0.1 0.7 0.5 -0.3 0 0
F -0.3 0 0 0.3 0 0 0 0 0 0 0 0 0 0 0 -0.1 0 -0.1 0 0
I -0.3 0 0 0 0 0 0 0 0.2 0 0 0 0 0 0 -0.1 0 -0.1 0 0
L -0.6 0 0 -0.1 0 0 0 0.5 -0.2 0 0 0 0 0 0 0.7 -0.1 -0.1 0 0
V -0.1 0 0 0.1 0 0 0 0 0.1 -0.1 0 0 0 0.1 -0.1 -0.3 -0.1 0.2 0 0
M -0.3 0 0 0 0 0 0 0 0.1 0 0 0 0 0 0 0.1 0 -0.1 0 0
W -0.2 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
Y -0.2 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
D 0.8 0.4 -0.1 -0.6 0.1 0.9 -0.1 -0.2 0 0.1 -0.2 -0.1 0 -0.4 0 0.1 0.3 0 -0.1 -0.2
E 0.4 -0.3 -0.1 -0.3 0.1 0.1 -0.1 -0.2 0.2 -0.1 0.1 -0.1 -0.3 0.1 -0.4 0.4 0.8 0.4 -0.1 -0.1
K 0.3 0.5 -0.2 0.5 -0.1 -0.1 0 0.2 0.6 -0.3 -0.1 0 0.1 -0.2 0 0.1 -0.2 0 0 -0.1
R -0.1 0 0 0.3 0 0 0 0 0.1 0.3 0 0 0 0 -0.1 -0.3 -0.2 0.1 0 0
H 0.3 0 0 0 0 0 0 0 -0.2 0 0 0 0 0 0 -0.1 -0.1 -0.1 0 0
N 0.5 -0.1 -0.2 0.5 -0.1 -0.1 0 -0.1 -0.1 0 -0.1 0 -0.2 0.3 -0.1 -0.1 0.1 -0.2 0 -0.1
Q 0.5 -0.1 0.3 0.1 -0.1 -0.1 0 0 0.4 -0.5 -0.1 0 0 -0.1 -0.3 -0.3 -0.4 0.8 0 0.4
S 0.5 -0.1 -0.1 0.3 -0.1 -0.1 0 -0.1 0.2 -0.2 0 0 -0.1 -0.1 0.2 0.1 -0.1 0.1 0 -0.1
T 0.5 0 0 0.1 0 0 0 0 -0.2 -0.1 0 0 0 -0.1 -0.1 -0.2 -0.2 0.3 0 0
G -0.5 0 0.5 -0.1 0 0 0 0 0.2 0 0 0 0 0.4 -0.1 -0.2 -0.1 -0.2 0 0
P 0.2 -0.1 -0.1 -0.4 0 -0.1 0 -0.1 -0.5 -0.2 -0.1 0 0.3 0 0.3 0.7 0.6 -0.3 0 0
C -0.2 0 0 0 0 0 0 0 -0.1 0 0 0 0 0 0 -0.1 0 -0.1 0 0
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0101 0.7 -0.7 -0.8 -0.2 -0.6 -0.7 -1 -1 0.7 1.2 1.4 0 -0.7 0.6 0.7 0.3 -0.4 -0.3 0.6 -1
0103 1.3 -0.3 -0.1 0.5 -0.4 -0.2 -0.8 -0.4 1.7 -0.1 -0.4 -0.8 -0.3 0 0.4 1 0.9 0.4 -0.8 -0.7
Select residue pair below:
i_j Score Prob
0101_0147 2.384 1.00
0101_0146 1.262 0.99
Local Interactions:
i_j Score Prob
0100_0101 0.755 0.69
0101_0103 0.728 0.65
0101_0102 0.697 0.60
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...
Page generated in 0.6911 seconds.