May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GREMLIN_4ote Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [C:0084] and [N:0198]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.2 0.4 1.1 -0.1 0.6 -0.4 -0.1 -0.2 -0.1 -0.5 -0.1 0.2 -0.1 0.5 0.5 0 -0.1 -0.5 -0.1 0
F 0 -0.1 -0.6 0.9 -0.4 -0.2 0 0 -0.1 -0.1 0 0 -0.1 0.5 -0.1 -0.2 -0.1 0.3 0 0
I -0.1 -0.1 0.2 0.3 -0.3 -0.1 0 0 0 -0.1 0 0 0 -0.2 -0.1 -0.1 -0.1 -0.1 0 0.8
L -0.1 -0.1 -0.4 0.2 0.3 0 0 -0.1 0.2 0.8 0 -0.1 -0.1 -0.5 -0.2 0.1 -0.1 -0.4 -0.1 1
V -0.1 -0.2 0.2 1.2 -0.3 -0.3 0 0.3 -0.1 -0.2 0 -0.1 0.6 -0.1 -0.1 -0.2 -0.1 -0.2 -0.1 -0.3
M 0 -0.1 -0.1 0.2 1 0.6 0 0 0 -0.1 0 0 0 -1 -0.1 -0.1 -0.1 -0.1 0 0.1
W 0 -0.1 -0.6 -0.2 -0.3 -0.1 0 0 -0.1 -0.1 0 0 -0.1 -0.2 -0.1 0.9 -0.1 0.9 0.4 -0.2
Y 0 0 -0.2 -0.1 -0.1 0 0 0 0 0 0 0 0 1.1 0 -0.1 0 -0.1 0 -0.3
D 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 -0.3 0 0 0 0 0 0
E -0.1 -0.1 -0.6 -0.7 -0.8 -0.2 -0.1 -0.1 -0.1 1 -0.1 -0.1 -0.1 1.3 -0.1 0 0.3 -0.1 -0.1 -0.7
K 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 -0.3 0 0 0 0 0 0
R 0 0 -0.1 0 0 0 0 0 0 0 0 0 0 -0.3 0 0 0 0 0 0
H 0 0 -0.1 -0.1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
N 0 -0.1 0.3 0.3 0.5 -0.1 0 0 -0.1 -0.1 0 0 0 0.1 0.3 -0.1 -0.1 -0.1 0 -0.2
Q 0.1 0.3 -0.2 0.8 0 0.9 0 0 -0.1 -0.2 0 0 -0.1 -0.5 -0.1 -0.1 0.3 -0.1 0 -0.4
S -0.1 0.1 0.9 -0.7 -0.6 0.3 -0.1 -0.1 -0.1 -0.2 -0.1 -0.1 -0.2 0.3 0.2 0.1 0.2 0.6 -0.1 0.2
T 0.4 0.1 0.2 -0.3 0.6 0.1 0 -0.1 -0.1 -0.2 0 0 -0.1 0.2 -0.1 -0.1 -0.1 0.6 0 -0.4
G -0.1 -0.1 0.7 -0.3 0.1 -0.1 0 0 0 -0.1 0 0 -0.1 -0.3 -0.1 -0.1 -0.1 -0.1 0 0.8
P -0.1 -0.1 0.5 -0.6 0.6 -0.2 0 0 -0.1 -0.1 0 0 -0.1 0.6 -0.1 -0.1 -0.1 -0.2 -0.1 0
C 0 0 -0.2 -0.1 -0.1 0 0 0 0.5 0 0 0 0 0 0 0 0 0 0 -0.1

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0084 1 0 0.5 0.9 0.9 0.1 0.2 -0.2 -0.9 -2 -0.9 -0.9 -0.6 0.5 0.6 1.1 0.6 0.2 0.3 -0.4
0198 -0.5 -0.3 1.7 0.9 1.2 0.3 -0.9 -0.7 -0.5 -0.1 -0.9 -0.8 -0.6 1.4 -0.3 0 -0.3 0.3 -0.7 0.3
Select residue pair below:
i_j Score Prob
0015_0084 0.884 0.84
0084_0173 0.839 0.80
0084_0236 0.822 0.78
0057_0084 0.728 0.65
0084_0172 0.683 0.58
0084_0198 0.566 0.38
Local Interactions:
i_j Score Prob
0082_0084 1.085 0.96
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...

Page generated in 0.536 seconds.