May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GREMLIN_4ote Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [E:0066] and [K:0069]
- A F I L V M W Y D E K R H N Q S T G P C
A 0 -0.1 -0.2 0 -0.9 -0.1 -0.1 -0.1 -0.1 0.3 0.6 1.1 0.3 -0.3 0.5 0.1 -0.1 0 -0.1 -0.1
F 0.3 0 0 0 -0.1 0 0 0 -0.1 -0.5 0.1 -0.1 0 -0.1 0.1 0.3 -0.1 0 0 0
I -0.5 0 0 0 -0.2 0 0 0 -0.2 -0.1 0.3 -0.2 -0.1 0.2 0.6 -0.2 0.3 0 0 0
L -0.2 0 -0.1 -0.1 -0.3 0 0 0 -0.3 -0.2 0.6 -0.1 -0.1 0.1 0.4 0 0.4 -0.1 0 0
V 0.1 0 0 -0.1 -0.3 0 0 0 0.7 -0.1 0.2 0 -0.1 0.6 -0.3 -0.4 -0.2 -0.1 0 0
M -0.1 0 0 0 -0.2 0 0 0 0.1 0.2 0.3 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0 0 0
W -0.1 0 0 0 0 0 0 0 0 -0.1 -0.2 0 0 0 -0.1 0 0 0 0 0
Y -0.3 0 0 0 -0.1 0 0 0 -0.1 -0.1 -0.6 -0.1 0 0.4 0.2 0.3 -0.1 0 0 0
D 0.2 -0.1 -0.2 0.1 0.3 -0.1 -0.1 -0.1 0.1 -0.5 0.7 0.1 0.2 0.3 0 0.1 0.1 -0.3 -0.2 -0.1
E 0.5 -0.1 -0.1 0.3 0.2 -0.1 -0.1 -0.1 -0.4 -0.2 0.5 0.6 0.3 -0.3 -0.4 -0.2 0.1 0.1 0.2 -0.1
K 0.7 0 -0.1 -0.2 -0.2 -0.1 0 0 -0.2 0.5 -0.6 -0.5 -0.1 0 0.1 1 0.2 0 -0.1 0
R -0.4 0 -0.1 0.8 0.1 0 0 0 0.4 -0.2 -1.2 -0.3 -0.2 0 -0.4 0.3 0.3 0.6 0 0
H 0 0 0 0 -0.1 0 0 0 -0.1 0.4 -0.3 0.3 0 -0.1 -0.2 -0.1 -0.1 0 0 0
N 0.2 -0.1 -0.3 -0.5 0.9 0 -0.1 -0.1 -0.6 0.2 0.6 0.4 0.5 0.4 0.1 0.1 0.2 -0.4 -0.2 -0.1
Q -0.3 -0.1 0.1 -0.2 0.7 -0.1 -0.1 -0.1 0.6 0.3 0.2 -0.3 -0.3 -0.2 0.3 -0.1 0.3 0.1 -0.1 -0.1
S 0.3 -0.1 0.5 -0.3 -0.4 -0.1 -0.1 -0.1 0.9 0.6 0.3 0.2 -0.1 0 0.1 -0.6 -0.3 -0.2 0.3 -0.1
T 0.3 0 0.3 0.2 0.2 -0.1 0 0 -0.1 0.1 0.3 -0.5 -0.3 -0.2 -0.1 -0.1 -0.1 0.2 -0.1 0
G 0.2 0 -0.1 -0.1 0.7 0 0 0 0.1 0.5 -0.1 -0.1 -0.1 -0.3 0 0 -0.3 -0.1 0 0
P -0.1 0 0 0 0 0 0 0 0 -0.1 -0.2 0 0 0 -0.1 0 0 0 0 0
C -0.1 0 0 0 0 0 0 0 0 -0.1 -0.2 0 0 0 -0.1 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0066 1.4 -0.6 -0.1 0 -0.1 -0.9 -1.5 -0.8 1.2 1.3 0.4 0.2 -0.9 1.6 1.2 1.4 0.6 0.3 -1.5 -1.5
0069 1.6 -1.3 -0.8 -0.4 0.4 -1.3 -1.3 -1.3 0.8 2 1.7 0.7 -0.2 0.8 1.3 0.6 0.6 -0.5 -1.1 -1.3
Select residue pair below:
i_j Score Prob
0065_0069 0.953 0.90
0066_0069 0.679 0.57
0069_0094 0.560 0.37
Local Interactions:
i_j Score Prob
0069_0070 0.704 0.61
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...

Page generated in 0.0152 seconds.