May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GREMLIN_4ote Return to Main Page

Instructions
  • Use the menu to the right to browse the coupling matrix.

Coupling matrix for [L:0057] and [L:0219]
- A F I L V M W Y D E K R H N Q S T G P C
A -0.1 0.8 -0.1 -0.5 -0.1 -0.3 -0.1 1.1 -0.1 -0.1 -0.1 -0.2 -0.1 -0.1 -0.1 -0.3 -0.1 -0.1 -0.1 -0.1
F 0.1 0.4 0.2 0.4 -0.6 1.4 -0.3 -0.7 0.5 -0.1 -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.1 -0.1 -0.1 0
I -0.1 0.6 -0.3 0.4 -0.7 0.3 -0.1 0.8 -0.1 0 0 0 0 0 0 -0.1 0 0 0 -0.1
L 0.1 -0.6 1.3 1.3 1.6 -0.5 0.2 -0.8 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.3 -0.1 -0.1 -0.1 -0.1
V -0.1 0.1 -0.3 0.1 -0.4 0 -0.1 1 -0.1 0 0 -0.1 0 0 0 -0.1 0 0 0 -0.1
M 0 -0.4 0 1.2 0.7 -0.2 -0.1 -0.8 0 0 0 0 0 0 0 0 0 0 0 0
W 0 -0.2 0 -0.4 1.1 -0.1 -0.2 -0.2 0 0 0 0 0 0 0 0.4 0 0 0 0
Y 0.1 -0.2 -0.1 0.9 -0.4 0.1 0.3 0 -0.2 -0.1 -0.1 -0.1 -0.1 -0.1 0.3 0.1 -0.1 -0.1 -0.1 0.1
D 0 -0.2 0 -0.1 -0.1 0 0 -0.2 0 0 0 0.5 0 0 0 0 0 0 0 0
E 0.2 0.7 0 -0.2 -0.1 0 -0.5 0.1 0 0 0 0 0 0 0 -0.1 0 0 0 0
K 0 -0.5 0 -0.1 0 0 0.9 -0.3 0 0 0 0 0 0 0 -0.1 0 0 0 0
R 0 0.5 0 -0.1 0 0 -0.1 -0.5 0 0 0 0 0 0 0 0 0 0 0 0
H 0 -0.2 0 -0.3 -0.1 0 -0.1 0.5 0 0 0 0 0 0 0 0 0 0 0 0
N 0 -0.6 -0.1 0.1 -0.2 0 0.7 0 0 0 0 0 0 0 0 -0.1 0 0 0 0
Q -0.1 0.4 0 -0.2 -0.1 0 -0.7 -0.2 0 0 0 0 0.2 0 -0.1 0.5 0 0 0 0
S -0.1 0.7 -0.1 -0.4 -0.5 -0.2 -0.3 1.2 0 0 0 -0.1 0 0 0 -0.2 0 0 0 0.3
T 0 -0.1 0 -0.2 -0.1 0 -0.1 0.2 0 0 0 0 0 0 0 0 0 0 0 0
G 0 0.1 0 -0.2 -0.1 0 -0.2 -0.2 0 0 0 0 0 0 0 0.8 0 0 0 0
P 0 -0.1 0 -0.1 0 0 0 -0.2 0 0 0 0 0 0 0 0 0 0 0 0
C 0 -0.3 -0.1 -0.6 0.2 -0.1 0.9 0.2 0 0 0 0 0 0 0 0 0 0 0 0

Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0057 0 1.3 1 1.9 0.4 0.1 0.1 0.8 -0.6 -0.3 -0.3 -0.6 -0.6 0 -0.6 -0.1 -0.6 -0.2 -0.9 -0.1
0219 -0.1 1.9 0.2 1.4 0.6 0.4 0.1 1.8 -0.4 -0.8 -0.8 -0.6 -0.6 -0.6 -0.4 0.3 -0.8 -0.8 -0.8 -0.3
Select residue pair below:
i_j Score Prob
0057_0219 0.816 0.77
0081_0219 0.801 0.76
0200_0219 0.602 0.44
0013_0219 0.537 0.33
0019_0219 0.527 0.32
Local Interactions:
i_j Score Prob
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: K D D K K ...

Page generated in 0.0346 seconds.