OPENSEQ.org -1515595952- GREMLIN Submission

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India-Argentina

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Coupling matrix for [I:0259] and [A:0263]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.2	-0.3	0.1	-0.3	0.2	0.1	-0.1	-0.5	0	0.7	0.2	0.4	0.3	-0.2	-0.6	-0.3	0	-0.1	0.4	0.3
F	0	-0.3	0.8	0.6	0.1	0.2	-0.2	-0.1	-0.8	0.7	-0.2	-0.1	0	0	-0.9	0.1	0.8	-0.2	-0.1	0.3
I	-0.6	-0.1	0.5	0.7	0.3	0.2	-0.4	-0.3	-0.5	-0.3	0.4	0.8	0.5	0.4	0.3	-0.6	-0.4	-0.4	-0.1	-0.2
L	0.5	0.2	0.5	-0.1	-0.4	-0.1	0.2	-0.3	-0.2	0.2	0.5	0.6	0.2	0.1	0	0.6	0	0.5	-0.3	-0.4
V	-0.4	0.4	0.5	0.4	-0.1	0.5	0.1	0.2	0	-1.2	0.4	0.6	0	-0.5	0.4	0	0	-0.3	-0.1	-0.1
M	-0.4	0	-0.1	0.6	0.3	-0.3	0.6	1	0	0.1	0.1	-0.5	-0.2	-0.1	0.2	-0.3	-0.1	-0.3	0	-0.1
W	-0.2	0	0.2	-0.1	0.3	0	0	-0.1	-0.1	-0.2	-0.2	0.2	-0.1	0.4	-0.2	-0.1	-0.1	-0.1	0	0
Y	0.8	-0.1	-0.1	0.7	-0.4	0.3	0	-0.1	-0.2	0.6	-0.5	-0.7	0	-0.1	-0.3	0.3	0	-0.1	0	0
D	-0.2	0	0.2	-0.3	-0.1	-0.1	0	-0.1	0.2	-0.3	-0.2	0.3	0.1	0	0.4	-0.1	-0.1	0.2	0	0
E	-0.3	-0.1	-0.4	-0.3	-0.1	-0.1	0	-0.2	-0.4	-0.5	0.7	0.6	0.5	-0.1	0.5	-0.1	-0.2	0.7	0	0
K	0.8	-0.1	-0.2	-0.7	-0.2	0.2	-0.1	1.1	0.7	0.3	-0.4	-0.4	-0.4	0.3	-0.1	-0.1	0	-0.4	0	0
R	0.4	-0.1	-0.7	-0.5	0.2	-0.4	-0.1	0.3	0.5	0.3	-0.3	-0.8	0.2	-0.2	0.6	0.4	0.3	0.5	-0.1	-0.1
H	0.1	-0.1	-0.3	-0.5	0.1	-0.1	0	-0.1	1.5	0.2	0	-0.2	-0.2	-0.1	-0.3	0.3	-0.1	-0.2	0	0
N	0.1	0.4	-0.2	0.2	-0.1	-0.1	0	-0.1	-0.1	0.5	-0.2	-0.3	0.2	-0.1	-0.1	-0.1	-0.1	-0.1	0	0
Q	0.4	-0.1	-0.4	-0.6	-0.2	-0.1	-0.1	-0.4	-0.1	0.3	-0.1	0.4	-0.1	-0.1	0.5	-0.1	-0.2	1	0	0
S	0	-0.1	0.1	-0.4	-0.2	-0.1	0	-0.1	0.2	-0.1	0.2	0.1	-0.2	-0.1	-0.1	0.3	0.3	-0.1	0	0
T	-0.4	0.2	0.1	0.8	0.5	0.2	-0.1	0.4	-0.4	-0.7	0.7	-0.1	-0.3	-0.1	-0.2	0.2	0.2	-0.5	0	0
G	0.1	0	-0.2	0.4	-0.1	-0.1	0	-0.1	-0.1	-0.3	-0.2	0.2	-0.1	0.4	-0.2	-0.1	-0.1	-0.1	0	0
P	-0.2	0	-0.1	0.7	-0.1	0	0	-0.1	-0.1	-0.2	-0.2	0.1	-0.1	0	0.4	-0.1	-0.1	-0.1	0	0
C	-0.2	0	0.2	-0.2	-0.1	0	0	-0.1	-0.1	0.1	-0.1	-0.3	0.3	0	0.2	-0.1	-0.1	-0.1	0	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0259	0.4	0.5	0.8	2.2	0.9	0.3	-0.8	-0.4	-0.6	-0.2	0.3	0.5	-0.3	-0.6	-0.2	-0.5	0.4	-1.1	-0.8	-1.1
0263	0.2	-0.7	0.8	1.3	0.2	0.1	-0.7	0	-0.1	0	0.8	0.6	0.3	-0.6	0.5	0.4	0.2	0	-1.1	-1.1

Select residue pair below:

i_j	Score	Prob
0233_0259	1.413	1.00
0237_0259	0.841	0.80
0259_0263	0.743	0.67
0210_0259	0.571	0.39

Local Interactions:

i_j

Score

Prob

See all coupling residues
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