OPENSEQ.org -1515595952- GREMLIN Submission

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Coupling matrix for [H:0228] and [A:0231]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.3	-0.1	-0.5	0	0.2	0.1	-0.1	0.1	0.1	-0.1	0.1	-0.3	0	0.2	0.3	-0.3	0.2	0.6	-0.1	-0.2
F	-0.2	0	0	0	0	0	0	0	0.2	0.4	-0.1	-0.1	0	-0.1	-0.1	-0.1	-0.1	-0.1	0	0
I	-0.1	0.1	0.1	-0.3	-0.3	-0.1	0	1.4	-0.2	-0.1	-0.2	-0.6	0.2	-0.3	0	0.2	-0.1	0.5	-0.2	-0.1
L	-0.5	-0.1	-0.3	0	-0.3	-0.2	0	-0.1	0.6	0.3	0.6	0.2	-0.2	-0.5	0.2	0.3	0.1	-0.2	0.1	-0.1
V	0	-0.1	-0.2	-0.2	-0.3	0.1	0	-0.1	0.2	0.1	0	0.5	0.2	0.3	-0.1	0.5	-0.6	-0.5	0.2	-0.1
M	-0.2	0	0.3	-0.1	0.4	-0.1	0	0	0.3	-0.4	0.2	0.2	0.1	0.1	-0.3	-0.3	-0.4	-0.2	0.3	0
W	-0.3	0	0	0	0	0	0	0	0.7	-0.2	-0.2	-0.2	-0.1	-0.1	-0.1	0.3	-0.1	-0.1	-0.1	0
Y	-0.3	0	0	-0.1	-0.1	0	0	0	-0.3	-0.1	0.1	0.4	-0.1	-0.2	0.7	0	-0.1	-0.1	-0.1	0
D	0.2	-0.2	-0.3	0.1	0.1	0.7	-0.1	0.1	-0.1	-0.4	0	0.3	-0.1	0.4	-0.1	-0.2	0.2	0.5	-0.5	-0.2
E	0.3	0.2	0.2	0.3	0.2	-0.3	-0.1	-0.3	-0.2	-0.3	0.3	0.5	-0.1	0.6	-0.1	-0.4	0.3	-0.5	-0.1	0.2
K	0.2	-0.1	-0.1	-0.3	0.4	0.2	0	-0.1	0.1	0.1	-0.6	0	-0.5	0.1	0.3	-0.1	0	0.4	0.1	0.1
R	0.2	0	0.2	0.2	0.2	0	-0.1	-0.1	0.1	0.4	-0.6	-0.3	0.1	0.2	0.1	-0.3	0	0.4	-0.5	-0.1
H	0.2	0	0.4	0.3	0.5	-0.2	0	-0.1	0.1	-0.5	-0.1	-0.3	-0.1	-0.2	-0.2	0.6	-0.1	-0.4	0.1	-0.1
N	0.4	-0.1	-0.3	-0.1	0.3	0.1	-0.1	-0.1	-0.2	-0.1	0.7	-0.5	0.3	-0.1	-0.3	0.4	0.2	-0.3	0.6	-0.1
Q	-0.1	-0.1	0.2	0.9	-0.2	-0.2	-0.1	-0.1	-0.7	-0.1	0.4	0.5	-0.4	-0.2	0.2	0	0.4	0.2	-0.1	-0.1
S	0	-0.1	0.4	0.2	-0.1	-0.2	0	-0.1	0.1	0.3	0.1	-0.3	0.3	-0.3	-0.5	-0.1	0.7	-0.2	0.2	-0.1
T	0.3	-0.1	-0.3	-0.3	-0.1	-0.2	0	-0.1	0.2	-0.6	-0.6	0.2	0.3	0	0.1	0.5	0.5	-0.1	0.3	0.3
G	0.8	-0.2	-0.5	-0.5	-0.7	0.1	-0.1	-0.7	0.1	0.2	0.7	0.8	-0.1	0.5	0.4	0	0	0.3	-0.3	-0.2
P	0	0	0.3	-0.1	-0.1	-0.1	0	0	-0.1	0.7	0.4	-0.2	0.2	-0.3	0.2	-0.4	-0.3	-0.2	-0.2	0
C	-0.5	0	0	0	-0.1	0	0	0	0	1.2	-0.2	-0.3	-0.1	-0.1	0	-0.2	-0.1	-0.1	-0.1	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0228	0.9	-1.3	0	-0.1	-0.2	-0.4	-1.2	-0.8	0.5	1	0.5	0.6	0.1	0.9	0.7	0.5	0.3	1.3	-0.6	-1.2
0231	1.3	-1.5	-0.6	-0.3	-0.3	-0.8	-1.7	-1.2	1.6	1.5	1.4	1.1	0.1	0.6	1	0.9	0.7	0.2	-0.6	-1.4

Select residue pair below:

i_j	Score	Prob
0231_0234	0.798	0.75
0227_0231	0.764	0.71
0231_0235	0.718	0.64
0228_0231	0.622	0.47
0134_0231	0.553	0.36

Local Interactions:

i_j

Score

Prob

See all coupling residues
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