OPENSEQ.org -1515595952- GREMLIN Submission

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India-Argentina

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Coupling matrix for [I:0109] and [N:0110]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	0.2	0.2	-0.5	-0.7	-0.5	-0.1	0.6	-0.1	-0.1	-0.1	0.7	0.2	0.1	-0.5	-0.5	-0.3	-0.4	1	0	-0.1
F	-0.5	-0.1	-0.1	-0.3	0.1	-0.1	-0.1	-0.1	-0.2	-0.3	0.1	-0.1	0.2	0.2	0.5	0.2	0.6	0.1	-0.7	0
I	-0.4	-0.1	0.1	0.7	0.7	0.1	0.3	-0.1	-0.4	-0.2	-0.1	-0.3	-0.3	0.5	-0.2	-0.4	-0.3	0.1	1	-0.1
L	-0.7	0.7	-0.2	0	0.1	0	0.2	0.2	0	-0.3	0.8	0.6	0.7	-0.4	-0.1	-0.5	0	-0.4	-0.1	-0.2
V	-0.5	0.2	-0.3	0	0.6	-0.1	-0.1	-0.1	0.2	0.2	0	-0.2	-0.2	-0.1	-0.2	-0.1	-0.2	0.4	0.2	0
M	0.2	-0.1	0.2	-0.2	0.5	-0.1	-0.1	0.3	0	-0.1	-0.1	-0.3	-0.3	-0.1	0.2	-0.4	0.2	-0.3	0	0.3
W	-0.1	0	0	-0.1	0	0	0	0	-0.1	0	-0.1	-0.1	-0.1	0.2	0	-0.1	0	-0.2	-0.1	0
Y	-0.3	0	0.6	-0.2	0.8	0	0	0	-0.3	-0.1	-0.5	0.2	-0.1	0.1	0.3	0	-0.2	-0.4	-0.1	0
D	0.5	-0.1	0.1	0.6	-0.3	0	-0.1	-0.1	-0.2	0	-0.6	0.3	-0.1	-0.1	-0.5	0.7	-0.2	-0.3	0.3	0
E	-0.1	0	-0.1	-0.1	-0.1	0	0	-0.1	-0.4	0.1	0.1	-0.2	-0.1	-0.2	-0.2	0.5	0.2	0.7	0.1	0
K	-0.7	0.2	0.9	0.3	-0.1	-0.1	-0.1	-0.1	-0.2	-0.4	0.6	-0.1	-0.3	0.5	0.1	-0.1	0	-0.4	-0.1	0
R	-0.2	-0.1	-0.1	0.2	-0.1	-0.1	-0.1	0.2	0	0.4	-0.3	-0.3	0.3	-0.2	-0.3	0.5	0.8	-0.2	0	0.4
H	-0.1	-0.1	0.1	0.5	-0.2	-0.1	-0.1	-0.1	-0.2	-0.2	-0.5	-0.3	0.8	0.9	-0.2	0.2	-0.2	0.2	-0.2	0
N	0.4	-0.1	0.2	0.2	-0.1	-0.1	-0.1	0.6	-0.6	0	0.2	-0.1	0.2	0.2	0.3	-0.2	-0.1	-0.1	-0.3	-0.1
Q	0.3	0	0.2	-0.2	0.1	0	0	0	0.2	-0.2	-0.1	-0.2	-0.2	-0.1	0.3	-0.1	-0.2	0.3	0.3	0
S	0.3	-0.1	-0.5	-0.2	-0.6	-0.1	-0.1	-0.2	0.8	0.1	0.2	0.5	-0.4	-0.2	0.5	0.6	-0.1	-0.7	0.2	-0.1
T	0	-0.2	-0.6	-0.4	-0.6	-0.1	-0.3	-0.3	1.2	0.6	0.2	0.1	-0.8	-0.2	0.1	0.3	0.6	0.2	0.4	-0.2
G	0.5	-0.4	0.8	0.7	0.7	0.4	0	0	-0.2	-0.2	0	-0.1	0	-0.5	-0.7	-0.5	-0.4	-0.4	0.5	-0.1
P	1.2	-0.1	-0.2	-0.1	-0.4	0	-0.1	-0.1	-0.3	-0.4	-0.3	0.2	0.5	0.1	0.1	0.2	-0.2	0.7	-0.6	0
C	0.2	0	-0.1	-0.1	-0.1	0	0	0	0.4	-0.1	-0.1	-0.1	0.4	-0.1	-0.1	-0.2	-0.1	-0.4	0.1	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0109	0.3	0.1	-0.1	1	-0.4	-0.4	-1.2	-0.5	-0.2	-0.5	-0.3	0.3	-0.1	0.4	-0.2	0.2	-0.5	1.2	0.2	-0.9
0110	0.5	-0.9	0	0.1	0.1	-1	-0.9	-0.8	0.1	-0.3	0.2	0.1	0.1	0.6	0	0.4	-0.3	1.4	1.1	-1.2

Select residue pair below:

i_j	Score	Prob
0086_0109	1.876	1.00
0109_0112	1.006	0.93
0105_0109	0.787	0.74
0059_0109	0.574	0.39

Local Interactions:

i_j	Score	Prob
0109_0111	1.150	0.97
0109_0110	1.029	0.94
0108_0109	0.953	0.90

See all coupling residues
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