OPENSEQ.org -1515595952- GREMLIN Submission

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Coupling matrix for [A:0055] and [G:0178]

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
A	-0.2	-0.6	0.1	-0.3	-0.2	-0.2	-0.3	0.3	0.3	0.1	0.1	0.4	0.5	-0.3	-0.3	0.1	0.1	-0.1	0.5	0
F	0.2	0.2	-0.2	-0.1	-0.4	-0.1	-0.1	-0.1	-0.2	-0.5	0.4	-0.3	-0.2	-0.1	0.1	-0.1	0.9	0.2	0	-0.1
I	-0.2	0.7	0	-0.1	0.1	0.8	0.3	0.1	-0.1	-0.1	-0.4	-0.6	-0.3	-0.2	0.1	-0.1	-0.1	0	0	-0.1
L	-0.3	0.5	-0.3	0	-0.6	-0.2	0.2	0.7	0.2	0.4	-0.1	-0.3	0.4	-0.2	0.3	-0.2	-0.4	0	0	-0.1
V	0	-0.3	0	-0.2	0.3	0.1	0.3	-0.5	0.2	-0.4	0.2	0.1	0.2	-0.3	0.2	0.2	-0.1	-0.1	0	-0.1
M	0	0	-0.1	-0.2	-0.1	0	0	-0.1	-0.1	0.5	-0.1	0.1	-0.1	0	-0.1	0	-0.1	-0.1	0	0
W	0	0	0	-0.1	0.3	0	0	-0.1	-0.1	-0.1	-0.1	0.2	-0.1	0	-0.1	0	-0.1	-0.1	0	0
Y	-0.1	-0.1	0.2	0.1	-0.4	-0.1	0.3	0.4	-0.1	-0.2	-0.3	0.4	-0.2	-0.1	0.1	-0.1	-0.3	0.2	0	0
D	-0.1	-0.1	-0.4	0	0	-0.3	0.4	0.1	-0.1	-0.7	0.5	1	0	0	-0.6	0.1	0.2	0.3	0.2	-0.1
E	0.1	0.1	-0.5	-0.3	-0.3	0.1	-0.1	0.3	0	0.2	0.2	-0.1	-0.1	0.5	-0.3	-0.2	0.1	0.3	-0.1	-0.1
K	-0.1	0.3	0.1	-0.2	0.1	-0.1	-0.1	0	0.5	-0.2	0.3	-0.3	0.3	0.1	0.5	-0.2	-0.6	0.5	0	-0.1
R	0.5	0.4	-0.3	-0.1	-0.2	-0.2	-0.2	-0.6	-0.2	0.2	-0.5	0.1	-0.3	0.5	-0.2	0.5	0.1	-0.1	-0.1	0.2
H	-0.1	-0.2	0.1	0.2	-0.1	-0.1	-0.1	0	0.5	-0.1	0.1	0.2	-0.2	-0.1	0	-0.1	-0.3	0.1	0	0
N	0.1	0.6	0.3	0.6	0.3	-0.2	-0.2	-0.5	-0.3	0.1	-0.5	-0.7	-0.2	0.5	0.1	0	0.3	-0.1	-0.1	0.2
Q	-0.2	-0.2	-0.2	-0.3	0	-0.1	-0.1	0.7	0.1	0.3	-0.2	-0.2	-0.2	-0.1	0	-0.1	0.7	0.3	0	0
S	0.3	-0.1	-0.1	0.6	0.2	-0.2	-0.2	0.3	0.2	0.2	-0.2	-0.1	0.2	0.2	0.1	-0.1	0.1	0.3	-0.2	-0.4
T	-0.1	-0.2	0.5	0.2	0.5	-0.1	-0.2	0.1	-0.1	0.4	-0.1	-0.2	0	0.3	-0.3	0.2	-0.2	-0.4	-0.1	0.3
G	-0.2	-0.5	0.2	0.3	0.2	-0.4	-0.3	-0.6	-0.1	0.6	0.7	0.6	0.4	-0.4	0.4	-0.2	-0.1	-0.4	-0.1	-0.1
P	0.6	-0.1	0.2	0.6	-0.1	0.8	0	-0.4	-0.3	-0.3	-0.3	-0.3	0.2	-0.1	0.1	0.1	0	-0.5	-0.2	0.2
C	-0.1	-0.1	0.4	0.2	0.7	0.6	0	-0.2	0.1	-0.4	-0.3	0	-0.2	-0.1	-0.3	-0.1	-0.1	-0.2	0	0

Conservation matrix (aka PSSM)

-	A	F	I	L	V	M	W	Y	D	E	K	R	H	N	Q	S	T	G	P	C
0055	0.5	-0.7	-0.4	0.1	0	-1	-0.9	-0.6	0.6	0.2	0.6	-0.1	-0.1	0.9	0	0.3	0.9	0.9	-0.1	-0.7
0178	0.2	0.2	-0.3	0.9	-0.3	-0.4	-0.9	0.3	0.8	0.8	-0.8	-0.2	0	0	0.2	-0.1	0.1	0.8	-0.7	-0.7

Select residue pair below:

i_j	Score	Prob
0055_0201	1.348	0.99
0055_0245	0.888	0.85
0055_0058	0.836	0.80
0055_0198	0.694	0.60
0055_0178	0.579	0.40

Local Interactions:

i_j	Score	Prob
0055_0056	1.921	1.00
0055_0057	1.869	1.00
0053_0055	1.493	1.00
0054_0055	0.747	0.68

See all coupling residues
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